Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq211828 192 7e-44 seq185390 127 2e-24 seq207413 107 2e-18 seq203897 107 2e-18 seq203896 107 2e-18 seq199157 107 2e-18 seq216572 100 3e-16 >seq211828 Length=4713 Score = 192 bits (212), Expect = 7e-44 Identities = 881/1373 (64%), Gaps = 52/1373 (4%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 |||||| || ||||| || || ||||| || ||| ||| ||||| | ||||| || Sbjct 1974 GCGAAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 1918 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| |||| || | || ||| || || | | ||| | |||||| ||| |||| Sbjct 1917 GGTGAGCTTGGCAAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 1859 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | ||||| || |||||||||||||| || | | | | | |||| || Sbjct 1858 TGTAG-GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCT-CCCACAC 1801 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||||| |||||||| || ||||| || ||| ||||| || | ||||| Sbjct 1800 GGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTT 1741 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || | | ||| | | | ||||||||| ||| || | ||| ||| Sbjct 1740 GTGCGAGACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCG 1681 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| |||| |||||| ||| || || || || || |||| ||| ||||||||| Sbjct 1680 CAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTT 1621 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 ||||||||||| || || ||||| |||||||| ||||| || | || || || ||||| Sbjct 1620 GGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGG 1561 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCGCTCACGCATT 109878 |||||| |||| ||| || ||| || ||||| | | | | | | | ||| Sbjct 1560 CATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGAT----GTTGGCGCGGA 1505 Query 109879 GCGT--CCCAATCATAAC-GACC-ACTAAATTTAGTCTCACCATCCCACATATCTGGTTG 109934 |||| |||| || | | | || || | | | | |||| | || || || Sbjct 1504 GCGTGGCCCAGTCCCACCTGTCCGAC--------GGCACGACGCCCCAGAGGTCGGGCTG 1453 Query 109935 AAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGC 109994 || |||| | || || || |||| | | ||| ||| | ||||| |||| || Sbjct 1452 GAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGC 1393 Query 109995 CAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCAT 110054 | |||| || || | || || || | || || ||||| || || | || | | Sbjct 1392 GAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGAT-GGCGCGGT--T 1336 Query 110055 GAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAG 110111 ||| ||| | ||| || | || | || | | | || || || || || || Sbjct 1335 GAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAG 1276 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||| || |||| || ||||| | || |||||| ||| || || || Sbjct 1275 GCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCAC 1216 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||| ||| ||||| ||||| || || |||| || || Sbjct 1215 GGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTC 1156 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 || || || | || || ||| ||| | || ||| | ||||| || || | Sbjct 1155 GTGCAGCTTCTGGTGGTCAAAC----TCG--CCGTTGGTGATGAACTTGGGCAGCGCGAG 1102 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTA 110349 || || || |||||||| | |||||| | || ||||| | | | ||||| Sbjct 1101 CGAGGCCAGGTTGCACACGGCCACCTCGTC--GGGCGACGTGTACTGGACGACCTCCGTG 1044 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || || ||| || | || || ||| || || ||| |||||| || Sbjct 1043 CACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCG 984 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||||| || || || || || |||| |||| ||| ||||| ||| Sbjct 983 TCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCAC 924 Query 110470 ACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || ||| ||| | ||| ||| | || |||| |||||| |||| Sbjct 923 AGCTCCTGGGCCTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACT 866 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 ||||| || |||| || || || | || || |||| || ||| || |||| Sbjct 865 TCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGA 806 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | ||||| | || ||| ||| || | ||||||||||||||| |||||||||| |||| Sbjct 805 GCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA-GGCCG 747 Query 110648 -AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 |||| || || ||| || ||| || | || ||||| || || | ||| Sbjct 746 TAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAG 687 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || | ||| |||| |||||| || ||||| |||| |||| | ||||| || Sbjct 686 TCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 634 >seq185390 Length=25718 Score = 127 bits (140), Expect = 2e-24 Identities = 336/502 (67%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| ||||| || || || || || | || ||||| Sbjct 20257 ATCTGGCGGTCGAAGCGACCGGGGCGCAGCAGCGCCGGGTCCAGCACGTCCTTGCGGTTG 20316 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGA 11613 || ||||| |||| | | ||| || ||| ||||| ||||||||||| || Sbjct 20317 GTTGCGGCGATGATGATGACGCCT---TCGTTGGCGTCGAAGCCGTCCATTTCCACCAGC 20373 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGC 11670 | |||||| | ||||||||| || || |||||| | || || || | |||| ||| Sbjct 20374 AACTGGTTCAGCGTCTGTTCGCGTTCGTCGTTGCCGCCGCCGATGCCGAC-GCCGCGCGC 20432 Query 11671 TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTG-GTTGGCACGTGC 11729 ||||| ||||| ||||| |||||||| ||||| || || | | | | || Sbjct 20433 GCGG--CCGACCGCGTCGATCTCGTCGATGAAGACGATGCAGGGGGCCGATTTCTTG-GC 20489 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||| ||||| | || || ||||| ||| || || || ||||||||||| ||||||| Sbjct 20490 CTGCTCGAACATGTCGCGGACACGGGACGCGCCGACGCCGACGAACATCTCGACGAAGTC 20549 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | | || | |||| |||||| || | ||| || |||||||| || || || | Sbjct 20550 CGAACCCGAGATGGTGAA-GAAGGGTACGCCCGCCTCGCCCGCGATGGCGCGGGCAAGCA 20608 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCAC 11908 | ||||||||||| || || | || | || || ||||| ||||||||| | || Sbjct 20609 GCGTCTTACCCGTCCCGGGCGGGCCGACCAGCAGCGCGCCTTTCGGGATCTTGCCCCCCA 20668 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGG 11968 | | | || || || ||||| || || ||||||||||| |||||||||| Sbjct 20669 GGCGGCTGAATTTCTGCGGGTTGCGCAGGAACTCGACGATCTCCTCAAGCTCCTCCTTGG 20728 Query 11969 CGGAGTCGATACCCTCAACATC 11990 | |||||| || | ||||| Sbjct 20729 CCTCGTCGATGCCGGCGACATC 20750 >seq207413 Length=2163 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 472 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 531 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 532 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 591 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 592 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 650 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 651 CGCCCAGTCGGCCTT 665 >seq203897 Length=2989 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 2090 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 2149 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 2150 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 2209 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 2210 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 2268 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 2269 CGCCCAGTCGGCCTT 2283 >seq203896 Length=2920 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 2021 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 2080 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 2081 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 2140 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 2141 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 2199 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 2200 CGCCCAGTCGGCCTT 2214 >seq199157 Length=2194 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||| | ||| ||||||||| || || |||||||| || Sbjct 1723 TGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCG 1664 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || || |||||||||||||| || | Sbjct 1663 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCG 1604 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGA-------CTTGTCGAACCACTTGAG 119680 ||||| ||| |||||||| || |||||| || ||||| || |||||| | Sbjct 1603 GCGAATCCGACGAGACGCTCGGC-GAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 1545 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| |||||| Sbjct 1544 CGCCCAGTCGGCCTT 1530 >seq216572 Length=10235 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 26901 AAAGAAAGTCTGGTATGCACCCAACAAATTTGAGTCATATGGGGAGGAAGAGATTAAAGC 26960 |||||| || | || || |||||| |||||| | || |||||| ||||| || || Sbjct 6074 AAAGAAGGTGTACTACGCCCCCAACGGCTTTGAGGCCTACGGGGAGCTCGAGATCAAGGC 6015 Query 26961 CGTTGAGGCTTGCTTGCGCGATGGCTGGCTCGCTGGCTTTGGTGATCGTACTGTGGAATT 27020 ||| |||| ||||||||| ||||||||||| |||||||| | || ||| Sbjct 6014 CGTCGAGGATTGCTTGCGAAGCGGCTGGCTCGCCGGCTTTGGAAACTACACCCAACGATT 5955 Query 27021 TGAAAAGAGGGTCGCTGACCTCTTCGGTAAGAAATTTGGACTATTTGTGAACTCTGGC 27078 || ||||||||||| | |||||| || ||||| | || || ||||| ||||| ||| Sbjct 5954 CGAGAAGAGGGTCGCCGGCCTCTTTGGCAAGAAGTACGGCCTGTTTGTCAACTCGGGC 5897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587323318619600