Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq211828 132 6e-26 seq207413 93.3 5e-14 seq203897 93.3 5e-14 seq203896 93.3 5e-14 seq199157 93.3 5e-14 >seq211828 Length=4713 Score = 132 bits (146), Expect = 6e-26 Identities = 322/485 (66%), Gaps = 2/485 (0%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || |||| ||||| || ||| ||| || ||||||| Sbjct 1117 ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACGTGTACT 1058 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || || || || | | || ||||| || Sbjct 1057 GGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACT 998 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| || Sbjct 997 TGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGA 938 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 106691 | || || ||||| || ||| || | | | || || |||||| ||||| Sbjct 937 GGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGT 878 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| | || ||||||| ||| || |||| | || || || |||| || Sbjct 877 AGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGT 818 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || || || ||||| | || ||| ||| || ||||||||||| ||||| |||| Sbjct 817 TGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAA 758 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT- 106870 |||||||| | |||||||| | || ||| || | || ||||| || | Sbjct 757 TCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTC 699 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || ||| Sbjct 698 AGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC 639 Query 106931 TTTCG 106935 || || Sbjct 638 TTGCG 634 Score = 114 bits (126), Expect = 2e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 412 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 353 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 352 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGTG 293 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 292 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 233 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | ||||||||||| ||||| | |||| Sbjct 232 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCATG 173 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 107360 | |||||| || | || |||| |||| || |||||| ||| ||| |||| Sbjct 172 TGCTGGGGTCGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 115 Query 107361 TTTTGAGACCAAAGTA 107376 | |||| |||||||| Sbjct 114 TCTTGAAGCCAAAGTA 99 >seq207413 Length=2163 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 282 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 341 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 342 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 401 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 402 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 458 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 459 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 517 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 518 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 577 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 578 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 637 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 638 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 >seq203897 Length=2989 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1900 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1959 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1960 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 2019 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 2020 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 2076 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 2077 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 2135 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 2136 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 2195 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 2196 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 2255 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 2256 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2313 >seq203896 Length=2920 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1831 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1890 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1891 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 1950 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 1951 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 2007 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 2008 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 2066 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 2067 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 2126 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 2127 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 2186 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 2187 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2244 >seq199157 Length=2194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1913 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1854 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1853 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACGGCCTCGAGGAT 1794 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 1793 GATCTGCTTGGGAACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 1737 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 1736 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 1678 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 1677 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 1618 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 1617 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 1558 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||| ||||| ||||| | |||||||||| | | | || || || | |||||| Sbjct 1557 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588325299125680