Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq194362 86.0 7e-12 seq193470 86.0 7e-12 seq186304 86.0 7e-12 seq180639 86.0 7e-12 seq180638 86.0 7e-12 >seq194362 Length=24653 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 22470 GGCTTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGT 22529 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 20888 GGCATCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGT 20947 Query 22530 TCGAGTCTCCTATTCTCCAC 22549 |||| || || |||||| Sbjct 20948 TCGAATCCGTTAGGCTCCAC 20967 >seq193470 Length=9340 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 17796 TAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCCCCTC 17852 ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||| Sbjct 1520 TAGCTCAGCGGTAGAGCGACACGTTTACACCGTGTTGGTCGGGGGTTCGATCCCCTC 1464 >seq186304 Length=18897 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 22470 GGCTTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGT 22529 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 15132 GGCATCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGT 15191 Query 22530 TCGAGTCTCCTATTCTCCAC 22549 |||| || || |||||| Sbjct 15192 TCGAATCCGTTAGGCTCCAC 15211 >seq180639 Length=8005 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 22470 GGCTTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGT 22529 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2206 GGCATCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGT 2265 Query 22530 TCGAGTCTCCTATTCTCCAC 22549 |||| || || |||||| Sbjct 2266 TCGAATCCGTTAGGCTCCAC 2285 >seq180638 Length=39462 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 22470 GGCTTTGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGT 22529 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3766 GGCATCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGT 3707 Query 22530 TCGAGTCTCCTATTCTCCAC 22549 |||| || || |||||| Sbjct 3706 TCGAATCCGTTAGGCTCCAC 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559034919936800