Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq208634 758 0.0 seq188777 109 2e-19 >seq208634 Length=57299 Score = 758 bits (840), Expect = 0.0 Identities = 1163/1647 (71%), Gaps = 56/1647 (3%) Strand=Plus/Minus Query 4901 CCGTCCAGGAAGTAGCGGGAGTTCAGTTCGTGGGCGCGGGTTCTGCGCTTGAGCTTCAGC 4960 ||||| || |||||| |||||||||| || | | ||||| ||||| | | Sbjct 43690 CCGTCGAGCCAGTAGCCCTTGTTCAGTTCGACCCCGATGCCTATGCGCCGCAGCTTGACC 43631 Query 4961 GCGCAGTACGGGACGGTCATGATCCCGCCGAAGGGATCGAAGACCAGGTCTCCTTCCATG 5020 |||| | | || |||||||| | |||||||||||| || ||||| || || | | Sbjct 43630 GCGCGGAAGGGCACGGTCATCAGCCCGCCGAAGGGGTCATAGACCCATTCGCCCGGCTCG 43571 Query 5021 GAGTACTGCACGATGGCCCGGTCGACGATGTCGAACTGCAGCGGGCACAGGTGCATTTCC 5080 | |||||| |||||||| ||||| ||||||||| | |||||||||||||||||||||||| Sbjct 43570 GTGTACTGGACGATGGCGCGGTCCACGATGTCGTATTGCAGCGGGCACAGGTGCATTTCC 43511 Query 5081 TGGCCCTTGCTGTACTGCTGGGCGTTGAGCGTCCGCATGCGGGCGACGTCGGTCCATACG 5140 || ||||||| ||| | ||| |||| ||||||||||| ||||| |||||||| || Sbjct 43510 TGACCCTTGCGCGCCTGTTCGGCATTGATGGTCCGCATGCGCGCGACATCGGTCCAGACA 43451 Query 5141 TCCGGGTGCCAGGACTGCGGTGGCAGCAGCATGAAGCCGGTGGGCAGCTTCCCGGTGACC 5200 || || ||| | ||||| ||||||||||||||| || |||| | || | | | Sbjct 43450 TCGGGATGCAGGCTGTGCGGCGGCAGCAGCATGAAGGTGGGCGGCAACCGGCCCTTCATC 43391 Query 5201 TCCAGCGATTCGCCGATGCGGACGTGGTGCTCGAAGTCGTAGACGGTGGACAGGCTGTAG 5260 || || |||| |||| || ||||| |||||||| |||||||||| |||||| ||| Sbjct 43390 TCGAGGTCTTCGGCGATCCGAACGTGATGCTCGAAATCGTAGACGGCAGACAGGTTGTG- 43332 Query 5261 TCGCGGTACAG--CTTGAACATCACGTC-GTGCGGAATGCCTTCGAAGTCCGCTTCAGTC 5317 ||| | ||| |||| | | | || | | | | ||| | | | | ||| | Sbjct 43331 -CGCCTTCCAGACCTTGTAGACCTGATCCGCGTCCAGTCCCTCCAGATCGCCCGGCAG-C 43274 Query 5318 AGCGGACGGTTGCCGTTGCTGCGGGTGAAGCCGTGGGCGTCCAACTGCCAGCGTGCCCGG 5377 || | |||| |||||| || || ||||||| || || | ||||||||| || ||| Sbjct 43273 AGGGTCCGGTCGCCGTTCGACCGCATGTAGCCGTGCGCATCGACCTGCCAGCGGGCGCGG 43214 Query 5378 CTNNNNNNNNNNNNNNNNNNNNCGGTGAGCTTCTTGTCCATGGCGAAGGGGACGATCTGG 5437 || || || || |||| |||| |||| | Sbjct 43213 CTGTAGCCGCCCT---------CGTTGCGCCA---GTCCTTGGCCTCGGGGTC------- 43173 Query 5438 CCGTCTTCGTCGATGCACAGGGGCTTGGCCTTGACCACCGGAATGTCGCCGTAGGCGTTG 5497 || | || || |||||||||| ||||||| |||| | ||| ||||| Sbjct 43172 CCAT-----TCCAT---------CTTGGCCTTGGCCACCGGCCGGTCGGCATAGCCGTTG 43127 Query 5498 GAGTTGTCGGTGGGGGGCTTGCGGAAGATCAGCAGGTACTCGGGCATGCCGACA-CCCAT 5556 | ||||| || || |||||||||||||||||| || |||| ||| ||| ||||| Sbjct 43126 CTGCGATCGGTCGGCGGGCGGCGGAAGATCAGCAGGTATTCCGGCACGCC-ACAGCCCAT 43068 Query 5557 CTTGGTGCCGTCCTTGCACTGTTCCGTCCACGAGAGGCGGTAGGTCTGGGCGTTCTCGCG 5616 | |||||||||||| || || ||||| ||||| ||||||||| ||||||||| Sbjct 43067 GCGCGAGCCGTCCTTGCATTGCTCGGTCCAGCCCAGGCGATAGGTCTGGTTGTTCTCGCG 43008 Query 5617 AACCACGTCGGTGACGATGGTCTTCATGCCCATATAGGCCCAGCCATGCTTGACGAAGGC 5676 |||||||| ||| ||||||||||||||| | |||||| ||||||| ||| | Sbjct 43007 CACCACGTCCGTGGTGATGGTCTTCATGCCGAGATAGGCAAAGCCATGGCGCTGGAA--C 42950 Query 5677 TCGAGTCACT---TCCATGTGGAAGGGGTAGACGGTCTGGAAGCCAAGGCCGGTCATTCC 5733 ||| | ||| |||||||| | | ||| |||||| || || | ||| | || || Sbjct 42949 TCGCG-CACGCAATCCATGTGCAGCGTCGAGAGGGTCTGAAACCCGAACCCGTTGATGCC 42891 Query 5734 GCCGGGAATGATGCGATCCTTCACGTGGATGCAGGCCAGACGCCCGGGGATGGTCACGCG 5793 ||| || ||||| || ||||| |||||||| || | || || || ||||| Sbjct 42890 GCCCGGGATGATCCGGTCCTTGACGTGGATCGCCGCGATCCGGCCCGGCTCCAGAACGCG 42831 Query 5794 CAGCAGTTCCGGGATCAGATAGTCCATCTGCTCGAAGAAGTGCGCGTTGTCGTCGGTGTG 5853 ||||||||| |||| |||| || ||||||||| |||| ||| ||| |||||||||||| Sbjct 42830 CAGCAGTTCGGGGACCAGAAAGCCCATCTGCTGCCAGAAATGCCCGTCGTCGTCGGTGTG 42771 Query 5854 GCCGAAGTCGGCGTAGTTCGGCGAGTACTCGTACTGGGTGCTGAAGGGGATGCTGGTGAT 5913 |||||||||||| |||||||| ||| ||||||||||||||||| ||||| ||||| Sbjct 42770 GCCGAAGTCGGCATAGTTCGGGCTGTATTCGTACTGGGTGCTGAACGGGATCGAGGTGAC 42711 Query 5914 GGTCAAGCCGACGCTGTTGCTTT--CCATGCGGCAGGTTTCGAGCACGGTGTCGTTGTTG 5971 | ||| || | | | | || | ||||| || ||| ||| |||| |||||||| | Sbjct 42710 GATCA-GCTG-CACCGAGGCATCGGCCATGGAGCGGGTCTCGGCCACGCAGTCGTTGTGG 42653 Query 5972 ACGATGGTGTAGTCCTTGCCCTTGATCTCGACGCGCTCCACGCCCATGGAGCGGGTGAGG 6031 ||| | |||||| |||| | |||||| ||||| ||||||| || |||| || Sbjct 42652 ACGCAGCGATAGTCCGGGCCCGAGGCCTCGACCCGCTCGACGCCCAAGGCGCGGACCAGC 42593 Query 6032 GTCTGTGCCATGGCGGCCACGGACAGGCCGTACTGCTTGATGATCTCGGTCATGCGCTGA 6091 | ||| |||||| | || |||||||| | ||||| ||| ||| |||| |||| Sbjct 42592 GCCTGCTGCATGGCAATCTCGCTGAGGCCGTATTCCTTGACGATGTCGATCATCTTCTGA 42533 Query 6092 ACCATGGTGTTGTGCTGCTGCCACTTCCGTTCGAGTTGGCGGCGGATGTCGCGCTCGGCC 6151 ||||| ||||||||| |||| || ||||| || |||||||| |||||||||||| Sbjct 42532 ACCATCTCGTTGTGCTGGCGCCATTTGCGTTCTAGCGAGCGGCGGACCTCGCGCTCGGCC 42473 Query 6152 TCGGTATAGATCAGGTCGATGCGCACACGGCCTG---TCTGCAGGAATCGGTGCAGGCGG 6208 ||||| ||||||| ||||| ||||| | | | | ||||| ||| || |||| || Sbjct 42472 TCGGTGTAGATCATGTCGAGCCGCACGCTGTCGGCGATCTGCCCGAAGCGCCGCAGCCGA 42413 Query 6209 TGAATGGACTGGATGAAGTCGTTGAACTTGAAGCCGATGCCCAGGTAGATGGCCCACGAG 6268 || | | ||||||||||||||||||||||||||||||||||||| | | || ||| | | Sbjct 42412 TGGACCGCCTGGATGAAGTCGTTGAACTTGAAGCCGATGCCCAGGAACACGGACCAGGCG 42353 Query 6269 CAGTGGCGCTGGAAGTTGCAGCCGCTGCCTGCGATCACTGGTTTGGCAGCCAGTTCCTGG 6328 || || ||||| | |||| |||| || ||||| || ||||| ||||||||||| Sbjct 42352 CAATGCCGCTGCAGGTTGGTGCCGGACCCCAGCATCACGGGCTTGGCGCCCAGTTCCTGG 42293 Query 6329 AACTCGCCGTCGCTGAACTGGACAATCGCGCG-CTCGCGCTCCTCCAGATCCTGGGCGCC 6387 | | |||||| ||| | | ||| ||| ||||||| | || || || || | ||| Sbjct 42292 ACCAGCCCGTCGGCGAAATCCCCGATCA-GCGTCTCGCGCGCGTCAAGGTCTTGCGAGCC 42234 Query 6388 GTAGACGCTGATGGCGGTGGGGATAGCGGCCTCGATCGCGTGGCGTTCCGCCTCGAGGTC 6447 |||||| | | ||| ||||| || || | ||| ||| || ||||||||||| Sbjct 42233 GTAGACCGTCGCGATGGTCGGGATCGCCTTTTCCAGCGCCGCGCGCTCGGCCTCGAGGTC 42174 Query 6448 ATGCCAGATGATCCGGTGAGCATCTGGAGCCTCGGCCCGGATCTCCATCAGTTTGGCGAT 6507 ||||||||||||||||| || || || | ||||| ||||||| |||||| || ||| Sbjct 42173 GTGCCAGATGATCCGGTGCGCGTCCGGGCCTTCGGCGCGGATCTGCATCAGCTTCTCGAC 42114 Query 6508 CCGGGCAGGAAGGCTCTCGCGCTTCTC 6534 |||||| || ||||| |||||||| || Sbjct 42113 CCGGGCGGGCAGGCTTTCGCGCTTTTC 42087 Score = 284 bits (314), Expect = 4e-72 Identities = 304/397 (77%), Gaps = 15/397 (4%) Strand=Plus/Minus Query 6703 GAAGATCGCCCAGGACGCCACCCACATCCAGAACTCGCCCTCTTTGTGGGCATGGATGGT 6762 ||||| ||||| || ||||| | ||| || || | |||||| |||| ||| | ||| Sbjct 41315 GAAGAGAGCCCAACTGGCTACCCAGACCCAAAATTCCCGCTCTTTATGGGGATGCAAGGT 41256 Query 6763 GAGTTGGTCGGCCTTCTCAGAGTTGCGTTTGAAGAACCTGGTCTTGGCCTGGCCGACATC 6822 ||||| |||||||||||| |||||| || ||||||| ||||||||||||||||| ||| Sbjct 41255 GAGTTTGTCGGCCTTCTCGCTGTTGCGCTTAAAGAACCGGGTCTTGGCCTGGCCGATATC 41196 Query 6823 CATCACGCCGAGGAAGGCCGAGTAAGCCAGTAGCTCGATGTATTCGTTCGGGCTTGGCGT 6882 ||||||| |||||||| | | || | ||| ||||||||||| ||||||||||||||||| Sbjct 41195 CATCACGTCGAGGAAGCCGGCATAGGACAGCAGCTCGATGTAGTCGTTCGGGCTTGGCGT 41136 Query 6883 GGCAGTGGCCACGTACCGGTACCGGACGCCATCG--------CCGCGGACG-CCGGCGGC 6933 ||| ||||| || | || || ||||||| ||| ||| | || | || || Sbjct 41135 GGCCGTGGCGACAAAGCGATAGGGGACGCCCTCGGTCTTGATCCG-GTTCGACTGGTCGC 41077 Query 6934 G-CGATCGTCACCAGCGAACAGAGCCATGAACTCGCGGAACGTCTTGCTGCCGCCGAAGC 6992 | || ||||| || || ||||| ||||||||||||||||| |||||| |||||||||||| Sbjct 41076 GCCGGTCGTCGCCGGCAAACAGGGCCATGAACTCGCGGAAGGTCTTGGTGCCGCCGAAGC 41017 Query 6993 CGCGAAGGCAACTGGCTTCGTCCAGGCTTGCCACGCTGAACCGGCGAGGGTCG--AGCTT 7050 |||| ||| ||| ||||| ||||| | || ||| || || || | ||| Sbjct 41016 CGCGCAGGATCGCGGCCTCGTCGAGGCTGACGCCGACGAA--GGGATCGGGCGAAACCTT 40959 Query 7051 GCCGTCGCGGACGGTCTCGTAATTGGTCAGGTAGATG 7087 ||| ||||| ||| ||||||||||||||||||||||| Sbjct 40958 GCCCTCGCGCACGCTCTCGTAATTGGTCAGGTAGATG 40922 >seq188777 Length=20276 Score = 109 bits (120), Expect = 2e-19 Identities = 206/293 (70%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 21161 GCCCTGGCCCGGCGTCACAAGCAGCGCCATGGGT-TGAGCCTGCTGGTGGTGGACTACCT 21219 |||| |||||| | |||| || |||||||| || ||||||| | |||||||| || Sbjct 9502 GCCCGGGCCCGCAAGCTGAAGC-GCACCATGGGTCTGGACCTGCTGATCGTGGACTATCT 9444 Query 21220 GCAGCTGCTGGAGAGCTC--CGGC-AAGTCCACTCGCACCGAGGACGTCAGCGACATGTC 21276 |||||||||| || | | |||| ||| || ||| | || |||||||| || | Sbjct 9443 GCAGCTGCTGAAGGCCGCATCGGCCAAGGACAGCCGCGTGAACGAGGTCAGCGAGATCAC 9384 Query 21277 CCGCCAG-TGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGC 21335 || | || | || | | || | ||| || | || ||||| |||| ||||||||||| Sbjct 9383 CCAGGGGCTGAAGGCCG-TCGCCAAGGAACTGGACATTCCCGTCATCGCGCTGTCGCAGC 9325 Query 21336 TCAACCGCTCCCTGGAGCAGCGGCC-GAACAAGCGACCGATGATGTCGGACCTGCGCGAG 21394 | ||| | || ||| || | ||||||| ||| |||||||||||||||| Sbjct 9324 TGTCGCGCCAGGTCGAA-AGCCGCGAGGACAAGCGCCCGCAACTGTCGGACCTGCGCGAA 9266 Query 21395 TCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGA 21447 ||||| ||||||||||||||||| | | |||||||| | |||||| || Sbjct 9265 TCCGGCAGTATCGAGCAGGACGCCGACATCGTGATGTTCGTCTTCCGCGAGGA 9213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156691587075348