Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_016767.1 Length=60714 Score E Sequences producing significant alignments: (Bits) Value seq177021 430 5e-116 >seq177021 Length=64117 Score = 430 bits (476), Expect = 5e-116 Identities = 849/1235 (69%), Gaps = 36/1235 (3%) Strand=Plus/Plus Query 43894 CCAGCATGGCCCGCACGAACCTGTCCCATATCTCCATGGCCTCGCGCTTCTCGGGCATGT 43953 |||||||||| || |||||| |||||||| || |||| | | |||||||||| ||||| Sbjct 55499 CCAGCATGGCGCGAACGAACTTGTCCCATTTCGCCATCCCGGCCCGCTTCTCGGCCATGT 55558 Query 43954 AGCTGTAGCGGTCATAGTGCCGCGAGCTGACGTCGTGCCGGCTATGGTTCTGAAGCCGGT 44013 || | |||||||||||||| |||||||||||| || || |||||| || || |||| Sbjct 55559 AGTTCCAGCGGTCATAGTGCTTCGAGCTGACGTCCTGTAGGGCATGGTTTTGCAGGCGGT 55618 Query 44014 CCCCTTATCTCCTGCGTCAGCCCGGCCTTGCCTGCCAGCGTTTTCCACGTCCGCCGCAGG 44073 | | | ||||| | | ||||| ||||| | ||| || || | ||||| |||||| Sbjct 55619 CGCGG-ACCTCCTTGGGGATGCCGGCTTTGCCCGTCAGAGTCTTGAAGGTCCGGCGCAGG 55677 Query 44074 TCGCGGTTCGTGATGTCCGGCAGCACGCCCCGGTCCCGTTGCCGCCAAAGGGCGGAATAG 44133 ||||||||||| | | || | |||||| ||||||||||| ||||| | |||||| Sbjct 55678 TCGCGGTTCGTCACATAGGGGATCACGCCGCGGTCCCGTTGGCGCCACATAAACGAATAG 55737 Query 44134 AGGGTGCCGTGACTGACGGGCTTCTCGGGATCCATCTGCGAGGGGAAGAACCAGCCGTGC 44193 || |||||||| |||||||||||| || ||| | ||| |||||||||||||||| Sbjct 55738 AGCGTGCCGTGGCTGACGGGCTTCGACGGGTCCTTGGCCGAAGGGAAGAACCAGCCGTAT 55797 Query 44194 TCGTTCGTGCCGATTTCGTCCAGCAGCTCGATGGCGAGCGACGGCAGCGGGATCGTGTGA 44253 ||||| | ||| | | || ||| ||| || ||||| ||| | | ||| Sbjct 55798 TCGTTGACGTTGATGGAGGAGATCAACTCTGCGGCCAGATTCGGCACCGGAACGGCATGA 55857 Query 44254 GGCTTCCCGTTCTTCGTCTTTGACCAGTCGAGCAGCCCTTCAGCCTT--GTCGTACTGGT 44311 |||| ||||||| || | |||||||||| | | ||| | || ||| |||||| Sbjct 55858 GGCTGGTCGTTCTTGGTGGTGGACCAGTCGATGATCTTTTC--CTTTGCGTCCCACTGGT 55915 Query 44312 CCCGGTGCAGGGCGGCAATTTCCTCCACGCGCTGCCCGGTGAGCATCAGCAGGCGCATGG 44371 | ||| ||| || || ||||| || ||||| ||||| ||||| || | || | | Sbjct 55916 CGATGTGGAGGCTTGCGATCTCCTCGACCCGCTGGCCGGTCAGCATGAGAATTCGGACCG 55975 Query 44372 CGTCAAGGTACGGGCCATGGATGGGCCTGTCCGGGTTTCCCAGCCAGTCCCACATGCGGC 44431 || | ||||| ||||| ||| | || ||| | |||||| | | || Sbjct 55976 CGCGAGTATACGGTGGATGGACAGGCGTATCGGGGCACTCGAGCCAGCGATAGAGCTGGA 56035 Query 44432 AGTAGTCCGCCTCACTGAGCCAGCGCGTGCCAACCACCTTAGGCTCGGTGGGGATCGAGG 44491 | | || |||| ||||||||||||||| ||||| || ||||| || || || Sbjct 56036 CGAACTCGTCCTCGTCGAGCCAGCGCGTGCCCTTGACCTTCGGTTCGGTCGGAATGCCGG 56095 Query 44492 CCGCCGGGTTGTGAATGAGCT--TGAACCG--GCGCGGGCTGCTGGAGCGGTAGTCCAGC 44547 ||| || | |||||| | | ||| || | |||| ||||| || ||||| Sbjct 56096 TCGCGGGAT--TGAATGGGATGCGGAAGCGCCGAGCGGATTGCTG--CCGATAGTCGTTA 56151 Query 44548 TCCGATTTCAGCCCCCACGCGAAGGCCGCCCGGATGTAGGAGCGAACGTGGTCCGCCATG 44607 || || |||| ||||| ||||| || | ||||||||||| |||||||| ||||| Sbjct 56152 TCTGACTTCATGCCCCAGCTAAAGGCAGCGTGTATGTAGGAGCGCACGTGGTCGGCCATC 56211 Query 44608 GAGTTTTTGCCGCGCTCGAAGATGGGCCGGAGCACGTTC-AGCACGTCCTCTGGCTCGAT 44666 || || |||||| || |||| || |||| || |||| | | ||||||| |||||| Sbjct 56212 GACTTGGCGCCGCGTTCATAGATCGGGCGGATCA-GTTCGATGATTTCCTCTGACTCGAT 56270 Query 44667 GTCGCGGGCGAGGCGGTTCCGGCCGAGACCATCCGTGATTTTATCCAGCCCCTTCTTCG- 44725 ||||||||||||||||| || ||||| |||| || || | ||| ||||| |||| Sbjct 56271 CTCGCGGGCGAGGCGGTTGCGCCCGAGCGTGTCCGCAATCTTGTTCAGTCCCTT-TTCGG 56329 Query 44726 ----CTTCCACGAAGCTCATTTTCCCCTGAGCCTTCAGGTTATCAACGTAGGCGTCGAAC 44781 |||||| || | || ||| | |||||| || | || ||| | ||||| Sbjct 56330 TTTCCTTCCAGGAGG--GCTTGTCCGC--AGCCTTGAGCGACGCGACATAGCCCTCGAAG 56385 Query 44782 AGGTCGCCAACGGTGCCCGGCCGGCTGTCACCGCCTGCCACCTTGATCGAGGCACCCTTG 44841 || ||| | || ||||| || || | | || || | |||||| | | || | Sbjct 56386 AGATCGGCCACAGTGCCAGGACGCGT---ATCGGTCGCGATCTTGAT-GCTTCGGCCCTT 56441 Query 44842 TTGATGGCCGT-GGAGAAGTCGCGGCCGAACACCTCGCGGGCGCTCGCCAGCGTCATGTG 44900 |||| ||| | ||||||||| ||| | ||| || || |||||||| ||| Sbjct 56442 TTGAATCACGTCAGCGAAGTCGCGCTTGAAGATCTCTCGCGCTTGCGCCAGCGACATTGA 56501 Query 44901 GGGGTAGTCGCCCATCTTCGAGAGGGTGCGCTTATTGTCGCGCCACTGCTGCGCGTACCA 44960 || ||| |||| | ||| || |||||| |||||||| |||||||| ||| Sbjct 56502 TGGATAGGCGCCGAGTTTCTTCTTGGCGCGCTTCCCATCGCGCCATTGCTGCGCCATCCA 56561 Query 44961 CGTC-GTCGTGACGCGGGTAGGCATGGGCTTGATGATGAGCACGAGGCGGCCGACGCCGC 45019 ||| | ||||||||| | ||||| ||||||| || ||| || || || ||| ||||| Sbjct 56562 -GTCGGCCGTGACGCGCTTCGGCATCGGCTTGAGGACGAGGACAAGACGACCGGTGCCGC 56620 Query 45020 GCCCTTCACCATCGGCCAGTGTGGCCTGCTTCCGGCTCTTCTCAACCCGTTTGATAGCGT 45079 ||||||| |||||||| || | | |||||| ||||| |||| || || || | || | Sbjct 56621 GCCCTTCGCCATCGGCAAGGTTTTCTTGCTTCTGGCTCATCTCGACGCGCTTCAGCGCAT 56680 Query 45080 TCCGGAT--CTGTCCGTCTGTCAGCGCTGGCATGG 45112 ||||| |||| ||| ||||| |||||||| Sbjct 56681 GTCGGATAGCTGT--GTCGGTCAGGCTTGGCATGG 56713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193645614546384