Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq196771 129 5e-25 >seq196771 Length=22834 Score = 129 bits (142), Expect = 5e-25 Identities = 256/374 (68%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 29755 ATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG 29814 |||| ||| ||| | ||| | |||| | | | || || |||| || | | |||| | Sbjct 20282 ATCCGCAGCCGGGGCAGGGGGCGCGGCTGGCGCGCCAGTTGCGTCTGCACCTGGTCCAGG 20223 Query 29815 TGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTC-TAGCCC 29873 || | |||||||| || || || |||| |||||||| || || |||| || || ||| Sbjct 20222 TGGTTCAGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCGTATCCC 20163 Query 29874 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 29933 | | || || |||| ||| | ||| || || | ||| ||||||||| || || ||||| Sbjct 20162 G-TCACATGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACCCC 20104 Query 29934 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTA 29993 || |||||| |||| | |||||| ||||| ||| ||| ||||| ||| Sbjct 20103 CAGGAACATGTCGGCCGAGCGCTGGTAAAGCTGCAGCGACAGCCGGCCGTCCTGCACCCG 20044 Query 29994 AAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 | ||| |||| || ||||| || || || |||||| || ||| ||| ||||||||| Sbjct 20043 CACCTGCCACAGCGTATGGCAGGGCGGCAGGGCCATGCGGTCCACCTCTCCGGGGTTCCA 19984 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30113 ||| | ||||| | || | || || | || | |||| ||||||| ||| | Sbjct 19983 GGCCGAGACGATCAGCCGGCGTGAATCGGGCGTCTTGCGGATGCGGTCCAC-CAGTTCGG 19925 Query 30114 C-AGCTGATCCACC 30126 | | |||||||||| Sbjct 19924 CGATCTGATCCACC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407499673578986