Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq179470 89.7 2e-13 >seq179470 Length=35510 Score = 89.7 bits (98), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 4997 CGAGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAGCAGATGGGGGAGGA 5056 ||||||| |||| ||||| | || ||| || ||| | | |||| | |||| || Sbjct 8229 CGAGGCCAGGCTGATCGTGCTCGACGAGGTGTCGATGGTCGGCGAGGAAATGGCCCGCGA 8170 Query 5057 CTTGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCCGGACAGCTCCCGCC--- 5113 | || | |||||||| |||||||||| |||||||||||||| ||||| ||||| Sbjct 8169 CCTGATGAGCTTCGGCAAGCCGATCCTCGTGCTGGGCGATCCCGGCCAGCTGCCGCCGAT 8110 Query 5114 CGTGGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCG 5173 | ||||| | ||||| | | ||||||| || |||| || ||||| ||||| Sbjct 8109 CAAGGGCGAAGGCGCCTTCACCCGCGATGCGCCCGACGTCATGCTGACCGAGATCCACCG 8050 Query 5174 CCAGGCCCAGGACAACCCGATCATCTGGATGTCCA 5208 ||||| ||| | | | |||||| || || ||| Sbjct 8049 TCAGGCGGCGGAAAGCGCCATCATCCGGCTGGCCA 8015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195091350313236