Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq178313 109 4e-19 >seq178313 Length=22639 Score = 109 bits (120), Expect = 4e-19 Identities = 213/306 (70%), Gaps = 14/306 (5%) Strand=Plus/Minus Query 79519 GAGCGCGAGCTTTCTGAGGGCTTC-CACAGCACGACCAACAATCGGATGGAGATGATGGG 79577 || ||||||||||| | |||| | ||| || |||||||| || |||||| |||||| Sbjct 10067 GAACGCGAGCTTTCGGGGGGCGAGGCGCAG-ACCACCAACAACCGCATGGAGTTGATGGC 10009 Query 79578 CGCCCTGATTGCGCTGGAGCGTCTGAAGTACCCCTGCAA-CGTGATC--CTGCATT-CCG 79633 |||| | ||||| ||| |||| ||| ||| || |||| | || ||| Sbjct 10008 CGCCATCGCCGCGCTCGAGGCGCTGA----CCCGGCCAAGCGAGATCACCATCACCACCG 9953 Query 79634 ACAGCCAGTATCTAAAAAACGGCATGACGCTCTGGATGAAAGGCTGGAAGCGTAACGGAT 79693 ||||| ||| | || |||||| | || | ||||| | ||||||||||| ||||| | Sbjct 9952 ACAGCGCCTATGTGAAGAACGGCGTCACCCAATGGATCCACGGCTGGAAGCGGAACGGCT 9893 Query 79694 GGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTCGATCTCTGGAAACGTCTTGATGCGG 79753 || ||| | || ||||| || || |||| ||| || ||| || | || ||||| | Sbjct 9892 GGCGCACCGCCGACCGCAAGCCGGTGAAGAACGCCGAACTGTGGCAAAGGCTGGATGCCG 9833 Query 79754 CCGCCAG--CCGTCACAATGTCCGCTGGAAGTGGGTTAAAGGTCATGCCGGTCATCGCGA 79811 | |||| | | ||| || | |||||| ||| | || || |||||||| |||| ||| Sbjct 9832 C--CCAGCACAGCCACCGGGTGCACTGGAAATGGATCAAGGGCCATGCCGGCCATCCCGA 9775 Query 79812 GAACGA 79817 |||||| Sbjct 9774 GAACGA 9769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329527979558520