Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq203637 95.1 9e-15 seq223142 93.3 3e-14 seq223622 87.8 1e-12 seq190944 86.0 5e-12 seq177117 84.2 2e-11 seq207513 82.4 6e-11 >seq203637 Length=1734 Score = 95.1 bits (104), Expect = 9e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | ||||||||| || || Sbjct 1509 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 1450 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | ||||| ||||||||||| ||||||||| || || Sbjct 1449 GATGAGGCGCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTT 1390 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||| | || || || || || |||| || || || Sbjct 1389 CTCGATCGTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1330 Query 48755 AAAAATCTGCATCGTGTGTA 48774 || |||||||||| ||||| Sbjct 1329 GAAGATCTGCATCGCGTGTA 1310 >seq223142 Length=9055 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | ||| | || |||| || | |||| Sbjct 6801 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGC 6860 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | |||||||||||| ||||| Sbjct 6861 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 6920 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | ||||| || || || ||| Sbjct 6921 TGCTTCACGTTCTCGATTGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 6980 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || |||||||| || Sbjct 6981 AGGGTCTTCACGAAGATCTGCATTGT 7006 >seq223622 Length=3914 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || ||||| || | || | || |||| || | |||| Sbjct 2397 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 2456 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| || || | ||| | |||||||||||| ||||| Sbjct 2457 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 2516 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||||| | | | || || ||| ||||| | || || || || ||||| Sbjct 2517 TGCTTTACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCCGTG 2576 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGTGTA 48774 | || || ||||| |||||||||| ||||| Sbjct 2577 AGGGTCTTGACAAAGATCTGCATCGCGTGTA 2607 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||| | || || || ||| || || || ||||| || | Sbjct 1845 GCCGCCACGGAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1904 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | ||||||||| || || || || ||||| || || | ||| Sbjct 1905 GAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCGGGGGG 1964 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||| || || || | | | || |||| ||| || Sbjct 1965 AATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGAC 2024 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||||||| || || || | || || || || |||||||| Sbjct 2025 CTCGAGCGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2072 >seq190944 Length=484 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | ||| |||| || | |||||| ||||| || Sbjct 418 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 359 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| ||||| || || ||| Sbjct 358 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATT 299 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | || ||||| || || |||| || || || Sbjct 298 CTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGAC 239 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 238 AAAGATCTGCAT 227 >seq177117 Length=2010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | ||| |||| || | |||| Sbjct 1447 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 1388 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || || || ||||| ||||| | ||| | |||||||||||| ||||||| Sbjct 1387 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1328 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || |||| ||| ||||| | || || || || || || Sbjct 1327 TGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1268 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || || ||||| || Sbjct 1267 AGGGTCTTGACGAAGATTTGCATTGT 1242 >seq207513 Length=1179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| |||| || | || |||| || | |||||| |||||||| Sbjct 996 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAA 937 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | ||| | |||||||||||| |||||||| || || Sbjct 936 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 877 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | || || || || || |||| || || || Sbjct 876 CTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 817 Query 48755 AAAAATCTGCATCGT 48769 || || ||||| || Sbjct 816 GAAGATTTGCATTGT 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379895402581686