Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq179470 120 5e-22 seq161729 120 5e-22 seq187878 111 3e-19 seq194362 86.0 1e-11 seq186304 86.0 1e-11 seq180639 86.0 1e-11 seq180638 86.0 1e-11 >seq179470 Length=35510 Score = 120 bits (132), Expect = 5e-22 Identities = 160/218 (73%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 120321 CGCGCCAGCGTAGCGAGGCGGATGATCGGGTTGTCGGCGGCTTGGCGGTGGATTTCGGTC 120380 || |||| || || || |||||||| | | | || || || || |||||||| |||||| Sbjct 8005 CGGGCCATGGTGGCCAGCCGGATGATGGCGCTTTCCGCCGCCTGACGGTGGATCTCGGTC 8064 Query 120381 AGGAAGAAGTCGGG---ATCGCCGGCCGTCAGCCCCGGCTTGTCGCC---GACCGGCGGA 120434 || | || |||||| ||||| || || | | ||| |||| || |||||| Sbjct 8065 AGCATGACGTCGGGCGCATCGCGGGTGA--AGGCGC--CTT--CGCCCTTGATCGGCGGC 8118 Query 120435 AGCTGACCGGGATCGCCCATCGCCAGGATCGGCACGCCGAACGACATCAGGTCTTTCGCC 120494 ||||| ||||||||||||| | | ||||||||| |||||| ||||||||| ||| Sbjct 8119 AGCTGGCCGGGATCGCCCAGCACGAGGATCGGCTTGCCGAAGCTCATCAGGTCGCGGGCC 8178 Query 120495 ATGTCGAAGCCGACCATCGACGCCTCGTCGACGACGAT 120532 || || ||||||||||||| ||||||||| ||||| Sbjct 8179 ATTTCCTCGCCGACCATCGACACCTCGTCGAGCACGAT 8216 >seq161729 Length=3143 Score = 120 bits (132), Expect = 5e-22 Identities = 150/201 (75%), Gaps = 10/201 (5%) Strand=Plus/Plus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGC---TCCGCAACGACG 110973 ||||||||||||||||||||| ||| ||| |||||||||| ||| || || ||||| Sbjct 1757 CCGGTCGAGCCGAAGCCGCCCTCGCCCCGCGCGGTCTGGTCCAGCGTCTCGGCCACGAC- 1815 Query 110974 TCGAAACG-GATGCG-GACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGAT 111031 |||| | ||| | || ||| |||| || |||||||| ||||| |||||| | Sbjct 1816 ---AAACTTGGCGCGCGTCACCGGG-GCGATCACCGCCTGGGCGATGCGTTCGCCGTGCC 1871 Query 111032 TGATGACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGT 111091 | | | || | ||||||| ||||||||||||||||| | | |||||||||| Sbjct 1872 GCAGCGCATAGGGTTCGCGGCCGAGGTTGATCAGGATCACCCCCAGCGGACCGCGATAGT 1931 Query 111092 CGCTGTCGACGGTACCGGGCG 111112 ||||||||| ||| ||||||| Sbjct 1932 CGCTGTCGATGGTGCCGGGCG 1952 >seq187878 Length=31006 Score = 111 bits (122), Expect = 3e-19 Identities = 224/327 (69%), Gaps = 14/327 (4%) Strand=Plus/Minus Query 172165 TCCTTTTCCTGGTTCAGGAAGTATTCCAGGCCGACCAGCAACAGGAACGTGCCGCCGAAC 172224 |||||||| |||| | |||| | |||||| |||| || |||||| ||||||||||| Sbjct 24438 TCCTTTTCGTGGTCGAAGAAGAAGGACAGGCCCACCATCATCAGGAAGGTGCCGCCGAAG 24379 Query 172225 GCCGCGACGATGTGATGCACGCCTTCCAGCGTGTGGCCGTATCGGTTCGGGTCTTGGAAC 172284 ||||||| | | ||| || | | || || | ||| || |||| ||| Sbjct 24378 GCCGCGATGGGCAGGTGCGCGTCATGCATGATGCGCGAATATTCGT-CGGGC--TGGCTG 24322 Query 172285 GCCATCTCCAGCACGGCCGCCGGCGAC------ATGTGCGCCGCGAAGGCGACGATCAGG 172338 || |||| || |||| || || |||| ||||||| | |||||||||| Sbjct 24321 GCGG---CCAGGACCATCGCCTGCCACGGTCCGATGTTGGCCGCGATGACGACGATCAGC 24265 Query 172339 ATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCCCAGGAAGAGC 172398 | |||||| | || ||||||||||| |||||||| | ||| || | ||||||| | Sbjct 24264 AGCGGGAACACGATCCGCATGCCGAAGACGGCGATCAGGATACCCCAGGTCAGGAAGCGA 24205 Query 172399 TTCTTCCACTTCTCGTCCCAATT-CTGAAGAACGTGGGCGTTGACGACGGCGTTGTCGAA 172457 || |||| || | || || || || || |||||| |||| |||||||||||| Sbjct 24204 CGCTGCCAC-TCGGGCGTCATTTCCTTGAGCTTGTTGGCGTTCACGATGGCGTTGTCGAA 24146 Query 172458 CGACAGCGAGATTTCCAGGATCGCCAG 172484 || ||||||||||| || | ||| || Sbjct 24145 GGAAAGCGAGATTTCAAGCACCGCGAG 24119 >seq194362 Length=24653 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||||| |||||| |||||||||||| ||||||||||| |||| || |||||| Sbjct 24426 GACGCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCA 24485 Query 133020 AATCCCTCCCCCGCATCCACAA 133041 ||||| |||||||| ||| || Sbjct 24486 AATCCTGCCCCCGCAACCAAAA 24507 >seq186304 Length=18897 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||||| |||||| |||||||||||| ||||||||||| |||| || |||||| Sbjct 18670 GACGCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCA 18729 Query 133020 AATCCCTCCCCCGCATCCACAA 133041 ||||| |||||||| ||| || Sbjct 18730 AATCCTGCCCCCGCAACCAAAA 18751 >seq180639 Length=8005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||||| |||||| |||||||||||| ||||||||||| |||| || |||||| Sbjct 5744 GACGCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCA 5803 Query 133020 AATCCCTCCCCCGCATCCACAA 133041 ||||| |||||||| ||| || Sbjct 5804 AATCCTGCCCCCGCAACCAAAA 5825 >seq180638 Length=39462 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||||| |||||| |||||||||||| ||||||||||| |||| || |||||| Sbjct 228 GACGCGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCA 169 Query 133020 AATCCCTCCCCCGCATCCACAA 133041 ||||| |||||||| ||| || Sbjct 168 AATCCTGCCCCCGCAACCAAAA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893252857087440