Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq179470 113 6e-20 >seq179470 Length=35510 Score = 113 bits (124), Expect = 6e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 90195 GCGCGCCAGGGTCGACAGGTGGATGATCGGGTTGTCCTTGGCCTGACGGTGGATTTCCGA 90254 ||| |||| ||| | ||| ||||||| | | | ||| |||||||||||||| || | Sbjct 8004 GCGGGCCATGGTGGCCAGCCGGATGATGGCGCTTTCCGCCGCCTGACGGTGGATCTCGGT 8063 Query 90255 CAGGAAGAAGTCCGGGTCGTTCGCCAG-CAGGCCGGCGGCGTCCTCGACCGGCGGAAGCT 90313 ||| | || || |||| |||| | | | || | || ||| || |||||| |||| Sbjct 8064 CAGCATGACGT-CGGGCGCATCGCGGGTGAAGGCGCCTTCGCCCTTGATCGGCGGCAGCT 8122 Query 90314 GACCAGGATCGCCCATGGCGAAGATCGGCACGCCGAATTCCATCAGGTCGTCGGTCATGC 90373 | || |||||||||| ||| ||||||| |||||| |||||||||| || ||| Sbjct 8123 GGCCGGGATCGCCCAGCACGAGGATCGGCTTGCCGAAGCTCATCAGGTCGCGGGCCATTT 8182 Query 90374 GCCGGCCGACCATGGAGGCTTCATCGACCACGATCAGGCTGGCC 90417 | ||||||||| || | || |||| ||||||||| |||||| Sbjct 8183 CCTCGCCGACCATCGACACCTCGTCGAGCACGATCAGCCTGGCC 8226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713767514649600