Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq207413 210 4e-49 seq203897 210 4e-49 seq203896 210 4e-49 seq199157 210 4e-49 seq211828 178 2e-39 >seq207413 Length=2163 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 1013 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 954 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 953 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 896 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 895 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 836 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 835 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 779 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 778 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 722 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 721 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 662 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 661 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 602 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 601 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 543 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 542 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 483 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 482 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 445 >seq203897 Length=2989 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 2631 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 2572 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 2571 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 2514 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 2513 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 2454 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 2453 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 2397 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 2396 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 2340 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 2339 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 2280 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 2279 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 2220 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 2219 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 2161 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 2160 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 2101 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 2100 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 2063 >seq203896 Length=2920 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 2562 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 2503 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 2502 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 2445 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 2444 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 2385 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 2384 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 2328 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 2327 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 2271 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 2270 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 2211 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 2210 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 2151 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 2150 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 2092 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 2091 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 2032 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 2031 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 1994 >seq199157 Length=2194 Score = 210 bits (232), Expect = 4e-49 Identities = 398/578 (69%), Gaps = 21/578 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 1182 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 1241 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 1242 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 1299 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 1300 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 1359 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 1360 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 1416 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 1417 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTTATCGACACCTACGTCAAGGACT 1473 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 1474 CGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGG 1533 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 1534 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 1593 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 1594 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 1652 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 1653 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 1712 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 ||||| |||||| | || || |||||||| |||||||| Sbjct 1713 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAC 1750 >seq211828 Length=4713 Score = 178 bits (196), Expect = 2e-39 Identities = 452/678 (67%), Gaps = 35/678 (5%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAA--G 221561 |||||||||||||| ||||| |||||||| |||||||||||||| | | |||| || | Sbjct 1289 AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTG 1230 Query 221562 CGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGA 221621 ||| || || |||||||| || |||||| |||||||| |||||||||||| |||| Sbjct 1229 CGG--GCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGA 1172 Query 221622 TGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 || || || || ||| |||||||||||| | | ||||||||| | ||| Sbjct 1171 CCACCTTCACGACGTCGTGCAGCTTCTGGTGGT------CAAACTCGCCG--TTGGTGAT 1120 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || | |||| | || | ||||||||| ||||||||||||||||| Sbjct 1119 GAACTTGGGC---AGCG---CGAGCGA----GGCCAGGTTGCACACGGCCACCTCGTCGG 1070 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || ||||| | || ||| || || ||||| ||| |||||| || ||||| | Sbjct 1069 GCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCT 1010 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 || || ||||||| ||| ||||||||||| ||||| |||| ||| ||||| | Sbjct 1009 GCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGA 950 Query 221862 GCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC 221921 ||| | | | || || | ||| || || |||| || | || | | || | Sbjct 949 TCTGCGACTCGAGGATGGCGAACCACAGCTC-CTGGGCCT---TGACCAC---GCGGCGC 897 Query 221922 CCTCGG----TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCG 221977 | ||| || || || | || | || |||| | || ||| ||| Sbjct 896 GCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCG 837 Query 221978 TCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT-GCTTGTTGTCTTTGACCCT 222036 |||||| || | | ||| || | || ||||| || ||| | || | Sbjct 836 AACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTC-TCCACGCG 778 Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| || |||||||| | | |||||||| | || || | |||||| Sbjct 777 CTTCATGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTC 718 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| ||| |||| || | || ||||| ||||| |||||||| ||||| || Sbjct 717 CTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAG 658 Query 222157 ATAGACGGCCAGAGCGCC 222174 |||| ||| | ||| || Sbjct 657 GTAGATGGCGAAAGCACC 640 Score = 114 bits (126), Expect = 2e-20 Identities = 230/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | |||||| |||||| ||||| |||||| Sbjct 413 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCC 354 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | || Sbjct 353 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGGGT 294 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 293 GCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 235 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | ||||| | |||| || Sbjct 234 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGACCGATGGCCACGCGCATGAGCA 175 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || ||||| || || | Sbjct 174 TGTGCTGGGGTCGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTAGGAGCGCTCGA 118 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| ||||||||| || || ||||| Sbjct 117 GGGTCTTGAAGCCAAAGTAGGTGTAGTTGAAGTC 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926238438270080