Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq197527 179 9e-41 seq198488 113 1e-20 seq183536 113 1e-20 >seq197527 Length=40067 Score = 179 bits (198), Expect = 9e-41 Identities = 265/372 (71%), Gaps = 5/372 (1%) Strand=Plus/Minus Query 3669 GATGTGATCGGGCAGGACTACTGG---GGTGAAGGCGTAACAGCCAAACGTATCGCCGGT 3725 || |||||||| |||| ||| || || ||||| |||||||| || ||||||| Sbjct 26153 GACGTGATCGGTGCGGACGGATGGACTGGCGACGGCGTGACAGCCAACCGCATCGCCGCG 26094 Query 3726 GCGCTTCGGGCGATGAATGGCGCCGACGTCACGGTCAATATTAACTCCCCTGGCGGGGAC 3785 || || ||| |||| | | || ||| |||||||| | | ||| ||| ||||| ||| Sbjct 26093 GCCCTGCGGTCGATCACCGCCGACGAGATCACGGTCGACCTCAACAGCCCCGGCGGCGAC 26034 Query 3786 ATGTTCGAAGGCCTGGCCATCTACAACCTTCTGCGTGAATACGAAGGCCGTGTGACTGTG 3845 | ||||| ||| |||| ||||||||||| ||||| || || | || || || || Sbjct 26033 TTCTTCGAGGGCGTGGCGATCTACAACCTGCTGCGCGAGGACCCACGCAAGGTCACGGTC 25974 Query 3846 AAGGTGCTCGGTATTGCCGCCAGCGCCGCCTCGGTCATTGCGATGGCCGGGGATGAAATT 3905 | ||||| |||||||| |||||||||||| || || |||||||| || || | Sbjct 25973 CGCATCCTCGGGCTTGCCGCCTCCGCCGCCTCGGTGATCGCCATGGCCGGCGACGAGGTC 25914 Query 3906 CAGATCGGCCGTGGTGCCTTCCTGATGATCCACAACTGCTGGGTCTACGCGATGGGTAAC 3965 ||||||||||||| | ||||||||| ||||||| |||||| ||| || || ||| Sbjct 25913 CAGATCGGCCGTGCCGGATTCCTGATGCTCCACAATGCCTGGGTGGTCGCCATCGGCAAC 25854 Query 3966 CGCCATGACTTTGCGGAACTGGCACAGTCTCTTGA-GCCGTTCGATACCGCTATGGCAGA 4024 ||||| ||| | || | ||| || | | ||| || |||||| | || ||||| || Sbjct 25853 CGCCACGACCTGGCCGCGGCGGCCGAGAC-CATGATCCCCTTCGATGCGGCCATGGCCGA 25795 Query 4025 CATCTACGCGGC 4036 ||||||| || Sbjct 25794 GGTCTACGCCGC 25783 >seq198488 Length=23545 Score = 113 bits (124), Expect = 1e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 3758 GGTCAATATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAACCTTCT 3817 ||| || || ||| ||| ||||| ||| ||||||| || || |||||||||||| | || Sbjct 3725 GGTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCT 3784 Query 3818 GCGTGAATACGAAGGCCGTGTGACTGTGAAGGTGCTCGGTATTGCCGCCAGCGCCGCCTC 3877 ||| | || | ||| ||| || ||| | |||| | || ||| |||||||| Sbjct 3785 GCGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTC 3844 Query 3878 GGTCATTGCGATGGCCGGGGATGAAATTCAGATCGGCCGTGGTGCCTTCCTGATGATCCA 3937 ||||||||| ||||| || || || |||||| ||| | | ||| ||||||||||| Sbjct 3845 GGTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCTGATGATCCA 3904 Query 3938 CAACTGCTGGGTCTACGCGATGGGTAACCGCCATGAC 3974 |||| ||||||| || | ||| ||||| | ||| Sbjct 3905 CAACACCTGGGTCATGGCCGTCGGTGACCGCAACGAC 3941 >seq183536 Length=15448 Score = 113 bits (124), Expect = 1e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 3758 GGTCAATATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAACCTTCT 3817 ||| || || ||| ||| ||||| ||| ||||||| || || |||||||||||| | || Sbjct 11724 GGTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCT 11665 Query 3818 GCGTGAATACGAAGGCCGTGTGACTGTGAAGGTGCTCGGTATTGCCGCCAGCGCCGCCTC 3877 ||| | || | ||| ||| || ||| | |||| | || ||| |||||||| Sbjct 11664 GCGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTC 11605 Query 3878 GGTCATTGCGATGGCCGGGGATGAAATTCAGATCGGCCGTGGTGCCTTCCTGATGATCCA 3937 ||||||||| ||||| || || || |||||| ||| | | ||| ||||||||||| Sbjct 11604 GGTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCTGATGATCCA 11545 Query 3938 CAACTGCTGGGTCTACGCGATGGGTAACCGCCATGAC 3974 |||| ||||||| || | ||| ||||| | ||| Sbjct 11544 CAACACCTGGGTCATGGCCGTCGGTGACCGCAACGAC 11508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119862026921988