Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq177236 87.8 7e-13 >seq177236 Length=4807 Score = 87.8 bits (96), Expect = 7e-13 Identities = 202/297 (68%), Gaps = 13/297 (4%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||| ||||| || ||||| |||||||||| ||| ||||| || | |||| ||| Sbjct 1062 CGTGAACAAGGTGATCCTGATCGGCAATCTGGGTCAAGACCCCGAGATCCGCAGCTTCCA 1121 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 || ||||| | ||| ||||| | || |||| || |||| | |||||| Sbjct 1122 GAACGGCGGCAAGATCGCCAACCTGCGGATCGCAACCTCCGAGACCTGGAAGGACCGCAA 1181 Query 9824 CAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTC--TTCGG-CCGCCT 9880 || |||||| ||| ||| |||||||||||| ||||||| || ||||| | ||| Sbjct 1182 CACCGGCGAACGCAAGGAACGCACCGAGTGGCACACCGTCGCCATCTATTCGGAGCCCCT 1241 Query 9881 CG-CCGAGATCGTCGACGAGC---ACCTGCGCAAGGGC-GCATCGGTCTACATCGAGGGG 9935 | ||| ||| | ||||| ||||| |||||| ||| |||||| ||||||| Sbjct 1242 GGTCCG----CGTGGCCGAGCAATACCTGAAGAAGGGCAGCA-AGGTCTATGTCGAGGGC 1296 Query 9936 CGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAG 9992 | | |||| || || |||||||| || ||| | || ||||| |||||||| Sbjct 1297 CAGCTGGAAACCCGCAAATGGCAGGACCAGCAAGGCAACGACCGCTATTCGACCGAG 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200770809393426