Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq196771 120 5e-22 seq219995 96.9 5e-15 >seq196771 Length=22834 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || || |||||||| | ||| ||||| || |||| | ||| | Sbjct 19624 GACCGCACCGGGACGGGCACGATCTCGCATTTCGGGATGCAGTGCCGCTATCCTCTGGAT 19683 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || || |||||||||||||| |||||| | ||||| |||||| |||| || || Sbjct 19684 CAGGGCTTTCCGCTGGTCACGACGAAAAAGCTGCACCTGAAATCCATCGTCCACGAACTG 19743 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| |||||| || ||||||| |||||| | | ||| |||||| ||| Sbjct 19744 CTGTGGTTCCTGTCGGGCGACACGAACATCCGCTATCTGCAGCAGAACGGCGTCAGCATC 19803 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| |||||||| || | | || | |||||||| || || || | || ||||| Sbjct 19804 TGGGACGAATGGGCGGACGCGAACGGCGACCTCGGCCCTGTCTATGGCCATCAGTGGCG 19862 >seq219995 Length=44233 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 169731 TTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCC 169790 |||||||||||||||| |||||| ||| ||||||||| ||| |||||||||||||||||| Sbjct 35616 TTGTAGCTCAGTTGGT-TAGAGTACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCC 35674 Query 169791 CGTCAGTCCTGCCATTTT 169808 ||||| | |||||||| Sbjct 35675 CGTCAACCGCGCCATTTT 35692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775449945167200