Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq219602 96.9 2e-14 seq207172 96.9 2e-14 seq207171 96.9 2e-14 seq207170 96.9 2e-14 seq72860 89.7 3e-12 >seq219602 Length=6474 Score = 96.9 bits (106), Expect = 2e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 4681 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 4740 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 4741 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 4793 >seq207172 Length=9513 Score = 96.9 bits (106), Expect = 2e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 1794 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 1735 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 1734 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 1682 >seq207171 Length=5364 Score = 96.9 bits (106), Expect = 2e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 3275 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 3334 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 3335 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 3387 >seq207170 Length=6629 Score = 96.9 bits (106), Expect = 2e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || ||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 3275 AAGATGGCGTACCAAGCGGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 3334 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 3335 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 3387 >seq72860 Length=269 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 68 AAGGTCGCCTACCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 127 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || |||||| Sbjct 128 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3258550077833336