Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq196808 89.7 1e-13 seq193478 82.4 2e-11 >seq196808 Length=14939 Score = 89.7 bits (98), Expect = 1e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 39495 GCAGGTCGCGATTTCGCTGTCCTTGATCTTGCGCGACGCGTTCGCGACGTCGATCGTGTT 39554 ||||| | ||||||| ||||||||| |||||| |||||||||| |||||| ||||| Sbjct 4783 GCAGGCCTCGATTTCCGATTCCTTGATCGGGCGCGAGGCGTTCGCGATGTCGATGGTGTT 4842 Query 39555 CTCGCCCACGCCTTCGCAG 39573 |||||||||||||||||| Sbjct 4843 TTCGCCCACGCCTTCGCAG 4861 >seq193478 Length=10097 Score = 82.4 bits (90), Expect = 2e-11 Identities = 358/563 (64%), Gaps = 27/563 (5%) Strand=Plus/Plus Query 13968 GGCGGCACGACCAGCAGGTTCGGCATCAGCCCGAGCGGGCGACCATAGTCACCCTTCATG 14027 |||||||| ||||| | ||| || | | ||| ||| | || || | ||| ||||| Sbjct 8047 GGCGGCACCACCAGGACGTTGGGGTTGACCCCAAGCAGCCGGCCCTTGTCGCCCTTGCGC 8106 Query 14028 CCCGAGAGCGCCGCACGAGCCGCAGCATAGGCCGTGCCATCGAGCGTCTGCTTG-GAGCC 14086 | | ||| || || ||| |||||| || | || |||| | || | ||| | Sbjct 8107 TTCATCATCGCGGCGCGGGCCAGGGCATAGTTCGCCTCGTCCAGCGGC-GCGCGCGAGGC 8165 Query 14087 GTAGGCCATTTGCCAGAACCCGAAGCCGACATTGGCGCGGGCATCCGT--GCCATAGAGG 14144 | ||||| |||||| | || ||||| ||||||| || || ||| ||||||||| Sbjct 8166 ATGGGCCAGTTGCCACAGGCCATAGCCGGCATTGGCTCGTGC--CCGGACGCCATAGAGA 8223 Query 14145 AATTCCTTGTTCATGAAGACGTGGTCATCATCGAGCTTGGTCTTCGAGACGAACTGG-AA 14203 | | | | ||||||| || | || |||||| ||| || | ||||| | || Sbjct 8224 TAGTTGTCGGTCATGAACACCCGTTCGTCATCGGCGCGGGTGATCTGGGTGAACTCGTAA 8283 Query 14204 GTCCCGGCGCTTCTGCAGGATGATCGGCTTGAGCGCCCGCGTGGTGTCGAGCAGGAACCA 14263 | | || || | |||| ||||| ||| || || ||||||||||| ||||| |||| Sbjct 8284 GGCTCG-CGTTCCTGCCAGATGAGCGGGCGGATGGCGCGCGTGGTGTCCAGCAGATACCA 8342 Query 14264 GGGCGTCCCCGTGCCG------------------CCACCGGTATTCGAG-ACGGTGACAG 14304 || || || ||| | ||| || | |||| | Sbjct 8343 GGCCGGGAACGGTCCGGNNNNNNNNNNNNNNNNNNNNCAGGTTAATGACCATCGTGAAGG 8402 Query 14305 TCTTCCCGTCCTCGTCGAGCACGGGGTGATCGGTGTCGAAGAAGTTCTGACCGTCATAGC 14364 || | |||||||||| | |||| ||||| ||||| |||||||| | ||| |||||||||| Sbjct 8403 TCGTGCCGTCCTCGTTGCGCACCGGGTGGTCGGTATCGAAGAAATACTGCCCGTCATAGC 8462 Query 14365 ACTCGGTCGCGAAGCCAAGCTTCAGGAGCTCGAACACGAGCATGTCCCATTTCGAGCCGG 14424 || | | |||||| | ||| ||| ||| | || | ||||| | | || | Sbjct 8463 ACAGCGAGGTGAAGCCCGCCGCCAGCAGCGGGAAGATGATCGTGTCCGGGTGCTGGCGCG 8522 Query 14425 CGGAGCGGCCCATTTCCTGGAACAGCGGCGAGTAAATCCCGAGATTGTCGGTCTCGATAT 14484 ||| || |||||||| || || ||| | | | ||||| ||| || | || || Sbjct 8523 CGGTATGGGCCATTTCCGCGATCATCGGTTTGAACAGACCGAGCTTGCCGTCCGAGAAAT 8582 Query 14485 CGTCGCGATCGACGCCGATGGTG 14507 ||||||| || ||| | |||| Sbjct 8583 CGTCGCGGCTGATGCCCACGGTG 8605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126174753956940