Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq198488 93.3 1e-14 seq183536 93.3 1e-14 >seq198488 Length=23545 Score = 93.3 bits (102), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 35727 CCAGGCGCGGATGATTTGCTCCACGCCAGAGCCCCACATGGTCTGGCCTTCACCGGCGTG 35786 ||||| ||| ||| ||| || || | |||||||||||||||||| || | || || Sbjct 3181 CCAGGACAGGAAGATCGCCTCGACCCCCGTGCCCCACATGGTCTGGCCCTCCGCCGCATG 3122 Query 35787 ACCAATGAGGATGGGGGGAATTCCAAACCAGCGGCAAATCTCCTCGATGTTAAATTTGCG 35846 || |||| |||||| || | || ||||||||||| | ||||||||| || ||| Sbjct 3121 GCCGATGACGATGGGCGGGACGCCGAACCAGCGGCAGACCTCCTCGATCGAGAAGCGGCG 3062 Query 35847 GCTGGCGAGGAGCTGGGCATCCTCAGGGTTCATCTGGACCGC-GTT-GAACTTCATGCCG 35904 | | || | ||||||||| || ||||||| | | | || ||| ||||| ||||||| Sbjct 3061 CGTCTCCAGCATCTGGGCATCGTCCGGGTTCAGC--GTCAGCTGTTCGAACTCCATGCCG 3004 Query 35905 CTATAGAGGAGCAT 35918 | ||||| ||| Sbjct 3003 GCCTCGAGGATCAT 2990 >seq183536 Length=15448 Score = 93.3 bits (102), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 35727 CCAGGCGCGGATGATTTGCTCCACGCCAGAGCCCCACATGGTCTGGCCTTCACCGGCGTG 35786 ||||| ||| ||| ||| || || | |||||||||||||||||| || | || || Sbjct 12268 CCAGGACAGGAAGATCGCCTCGACCCCCGTGCCCCACATGGTCTGGCCCTCCGCCGCATG 12327 Query 35787 ACCAATGAGGATGGGGGGAATTCCAAACCAGCGGCAAATCTCCTCGATGTTAAATTTGCG 35846 || |||| |||||| || | || ||||||||||| | ||||||||| || ||| Sbjct 12328 GCCGATGACGATGGGCGGGACGCCGAACCAGCGGCAGACCTCCTCGATCGAGAAGCGGCG 12387 Query 35847 GCTGGCGAGGAGCTGGGCATCCTCAGGGTTCATCTGGACCGC-GTT-GAACTTCATGCCG 35904 | | || | ||||||||| || ||||||| | | | || ||| ||||| ||||||| Sbjct 12388 CGTCTCCAGCATCTGGGCATCGTCCGGGTTCAGC--GTCAGCTGTTCGAACTCCATGCCG 12445 Query 35905 CTATAGAGGAGCAT 35918 | ||||| ||| Sbjct 12446 GCCTCGAGGATCAT 12459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124304552722116