Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq213761 98.7 3e-16 seq177172 98.7 3e-16 seq219951 87.8 5e-13 seq192107 87.8 5e-13 >seq213761 Length=3005 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 2521 TGGTCGTAGTGGTAGGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGAGCGCGTG 2580 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 2581 GGCCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 2638 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || ||||||| Sbjct 2639 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATAAGGT 2698 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 2699 CTTTGGGCTTTAAGCCCTTCGG 2720 >seq177172 Length=603 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 119 TGGTCGTAGTGGTAAGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGATCGCGTG 178 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 179 GGTCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 236 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || ||||||| Sbjct 237 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATAAGGT 296 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 297 CTTTGGGCTTTAAGCCCTTCGG 318 >seq219951 Length=2829 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2496 GTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAA 2555 ||| |||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 27 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 86 Query 2556 CGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTAGG 2606 || || | ||| || | || ||||||||||| | || || || || || Sbjct 87 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTTTAAGCCCTTCGG 137 >seq192107 Length=2079 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2496 GTTTGGCTTGTGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAA 2555 ||| |||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 2053 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 1994 Query 2556 CGCTACGCGCCAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTAGG 2606 || || | ||| || | || ||||||||||| | || || || || || Sbjct 1993 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTTTAAGCCCTTCGG 1943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129755582942388