Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq194362 102 1e-16 seq186304 102 1e-16 seq180639 102 1e-16 seq180638 102 1e-16 >seq194362 Length=24653 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 20966 TGGAGCCTAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACT 20907 Query 53801 GAGCTAATTCCCCAAT 53816 ||||||| |||| || Sbjct 20906 GAGCTAAGGCCCCGAT 20891 >seq186304 Length=18897 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 15210 TGGAGCCTAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACT 15151 Query 53801 GAGCTAATTCCCCAAT 53816 ||||||| |||| || Sbjct 15150 GAGCTAAGGCCCCGAT 15135 >seq180639 Length=8005 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 2284 TGGAGCCTAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACT 2225 Query 53801 GAGCTAATTCCCCAAT 53816 ||||||| |||| || Sbjct 2224 GAGCTAAGGCCCCGAT 2209 >seq180638 Length=39462 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 3688 TGGAGCCTAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACT 3747 Query 53801 GAGCTAATTCCCCAAT 53816 ||||||| |||| || Sbjct 3748 GAGCTAAGGCCCCGAT 3763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663627006076240