Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq211828 109 7e-19 seq207413 93.3 5e-14 seq203897 93.3 5e-14 seq203896 93.3 5e-14 seq199157 93.3 5e-14 >seq211828 Length=4713 Score = 109 bits (120), Expect = 7e-19 Identities = 851/1358 (63%), Gaps = 30/1358 (2%) Strand=Plus/Plus Query 75587 CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 |||||||| | |||| ||||| | || || ||||| || || ||| | || ||||| Sbjct 634 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 693 Query 75647 GAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCT 75705 || | | || ||||| || | || ||| || | |||||||| | ||| Sbjct 694 GACCTGAAGAAG-AACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCT 752 Query 75706 GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG 75765 ||||||||| ||||| ||||||||||| || ||| ||| || | ||||| || || || Sbjct 753 GTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTG 812 Query 75766 TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACAC 75825 || || |||| || || || | |||| || ||| ||||||| || | ||| Sbjct 813 CCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGA 872 Query 75826 AAAGTATGAAGAGGAGGGTAGAGC-CAATGCGACTGTACCA-GCCGCCGATGTTTGGAAG 75883 || || ||||||| | || | ||| || | | ||| || | ||| Sbjct 873 GCGCTACGAGCAGGAGGGCCGCGCGCGCCGCG--TGGTCAAGGCCCAGGAGCTGTGGTTC 930 Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || || ||| | || |||| ||||| || || || || ||||| |||||||| || || Sbjct 931 GCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGC 990 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 ||| ||| ||||| || | | || || ||| || || || || |||||||| Sbjct 991 AACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAG 1050 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTT 76063 | | ||||||| || ||| ||| || ||||| |||| || |||| || Sbjct 1051 GTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTG 1110 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 || |||| || || | | || || ||||| | | || || || || || Sbjct 1111 CCCAAGT---TC-ATCACCA-AC-GGCGAGTTTGACCACCAGAAGCTGCACGACGTCGTG 1164 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAG 76180 ||| | || ||||| || || ||| || || |||| || | || ||||| ||| Sbjct 1165 AAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGAG 1224 Query 76181 ACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 || || || || || ||||| ||||| || || || | || || || || || || Sbjct 1225 ---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCC 1281 Query 76241 GATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAA-TGC 76299 || || || || | ||| || | | || || || ||| ||| | || || Sbjct 1282 GACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGC 1341 Query 76300 TCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGC 76359 | ||||| || ||||| || |||| |||||| || || | || | | Sbjct 1342 GC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGT 1400 Query 76360 CCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA 76419 | | || |||| |||| | ||||| || ||||||||| | || ||| ||| || Sbjct 1401 CGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGA 1460 Query 76420 TATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| | | | | || | ||||||| ||| | |||| Sbjct 1461 CCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGC 1520 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || | ||||| || ||| || | |||| || ||||| || ||||| ||| | || Sbjct 1521 CCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCA 1580 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 ||| |||| || || || |||||||| || ||||| || ||||||||| | | | Sbjct 1581 GATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCAT 1640 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 |||||| || || || | | |||||| ||||||| | || ||| || || || Sbjct 1641 CCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCCAGCAGCGCGG 1700 Query 76660 TCTCTGGT---CCAAGGATATGAAGGATCTCATGGTG-AAAGCGGGTGGTTCCATTCAAA 76715 ||||||| || | | ||| | ||| | | | | ||| | | || || Sbjct 1701 CCTCTGGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTC----CAGC 1756 Query 76716 ATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGA 76775 ||| || ||||| || || |||||||| || ||| || |||||||| || | Sbjct 1757 GCATCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGC 1816 Query 76776 TGAAAGATGTCATTGACATGGCCGCAGATCG-TGGTCGCTTCATTGATCAAAGTCAAAGT 76834 | | |||| ||||||||||| ||||| | | | || ||| || || || || Sbjct 1817 AGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGC-CTACATCGACCAGAGCCAGTCG 1875 Query 76835 ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCG 76894 | || | | ||||| || || | |||||||| | || ||||| | ||||| Sbjct 1876 CTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACGCC 1935 Query 76895 TGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 ||| |||| ||||| ||||| |||||||| || || Sbjct 1936 TGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCG 1973 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 99 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 156 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || ||||| | ||| ||| |||| Sbjct 157 TCGAGCGACCCCAGCACATGCTCATGCGCGTGGCCATCGGTCTGCACAAGGACAACATCC 216 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 217 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGA 276 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 277 CGCTCTTCAACGCCGGCACCCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 336 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 337 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 396 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 397 CGGCCGGCGGCATCGG 412 >seq207413 Length=2163 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 695 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 636 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 635 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 576 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 575 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 516 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 515 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 457 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 456 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 400 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 399 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 340 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 339 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 282 >seq203897 Length=2989 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 2313 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 2254 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 2253 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 2194 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 2193 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 2134 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 2133 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 2075 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 2074 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 2018 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 2017 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1958 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1957 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1900 >seq203896 Length=2920 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 2244 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 2185 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 2184 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 2125 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 2124 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 2065 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 2064 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 2006 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 2005 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 1949 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 1948 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1889 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1888 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1831 >seq199157 Length=2194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 277/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || || || | | | |||||||||| | ||||| ||||| ||| | || Sbjct 1500 GCCATCGAGACCGTGCCCTCTGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAAC 1559 Query 65056 ACAAAGTC--TCGCT-CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| ||||||||||||| || | | || || || ||||| ||| Sbjct 1560 AAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATC 1619 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||||||||| |||||| | || | ||| | |||||||| || |||||||| ||| Sbjct 1620 TTCTTCTCCGGCAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGC 1679 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG 65232 || |||| || || | || ||| |||||||| |||||| || || ||| || Sbjct 1680 CTCGCCTTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG 1738 Query 65233 GAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGT 65288 ||| || | || || ||| || | ||| | |||| | | ||| || ||| | Sbjct 1739 --CCTCCTCTACACCATGCTCGTCAACAAGCCCTCGACCG-ACGTTCCCAAGCAGATCAT 1795 Query 65289 GAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCAT 65348 ||||| || ||||||||||| | ||| | || | ||||| ||||| Sbjct 1796 CCTCGAGGCCGTCGAGATTGAGAAGGAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCAT 1855 Query 65349 CGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| |||||| | || |||| | ||||||| |||| || | || || |||||| Sbjct 1856 CGGCATGAACGCCGACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594895610788160