Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020856.2 Length=40931 Score E Sequences producing significant alignments: (Bits) Value seq179236 93.3 1e-14 >seq179236 Length=9799 Score = 93.3 bits (102), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29548 CAGGTCGCTATCATGCTTGTGGACCTCAAGACCGTCCGCGCATGGGGAAATCCCGCCCAC 29607 |||||| |||||||| | || || || ||| |||||| ||||| ||||| | ||| Sbjct 7415 CAGGTCTGCATCATGCTGGCCGATCTGAAAACCTGCCGCGCCTGGGGCAATCCGGGCCAT 7474 Query 29608 GACGACAACTGGGTTGATATCGCAGGCTATGCGGCGTGCGGCGGCGAAATCGCG 29661 | |||||||||| | ||| | ||||||||||| || |||||||| || |||||| Sbjct 7475 GCCGACAACTGGATCGATCTGGCAGGCTATGCTGCCTGCGGCGGTGAGATCGCG 7528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130508769787812