Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq194362 104 3e-17 seq186304 104 3e-17 seq180639 104 3e-17 seq180638 104 3e-17 >seq194362 Length=24653 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 20892 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 20951 Query 18067 GTCCGCTATTCTCCA 18081 |||| || ||||| Sbjct 20952 ATCCGTTAGGCTCCA 20966 >seq186304 Length=18897 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 15136 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 15195 Query 18067 GTCCGCTATTCTCCA 18081 |||| || ||||| Sbjct 15196 ATCCGTTAGGCTCCA 15210 >seq180639 Length=8005 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2210 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 2269 Query 18067 GTCCGCTATTCTCCA 18081 |||| || ||||| Sbjct 2270 ATCCGTTAGGCTCCA 2284 >seq180638 Length=39462 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3762 TCGGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGA 3703 Query 18067 GTCCGCTATTCTCCA 18081 |||| || ||||| Sbjct 3702 ATCCGTTAGGCTCCA 3688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559673124080800