Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq197527 134 4e-27 seq180984 86.0 2e-12 seq193478 82.4 2e-11 >seq197527 Length=40067 Score = 134 bits (148), Expect = 4e-27 Identities = 114/139 (82%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 39878 TGCTCTGCCCC-TGAGAACTGGGCCGCCTGAAGCTGGAGTTTTCCGCTAAGTTTCCCTGG 39936 ||||||||||| ||| ||| || ||| |||| |||| ||||| ||||| ||| | || Sbjct 15425 TGCTCTGCCCCCTGATAACAGGACCGTTTGAAAGTGGACTTTTCAGCTAACCTTCGCCGG 15484 Query 39937 CTGGGAGAGGAGCGGAATCGCATGAAGGCATCGAAGTTCACAGAGGCGCAGAAGGCGTTC 39996 ||| ||||||||| | |||||||| ||||||||||| ||||||||||||||||| Sbjct 15485 CTGCGAGAGGAGCTGCCGACAATGAAGGCGTCGAAGTTCACCAAGGCGCAGAAGGCGTTC 15544 Query 39997 ATCCTGAAGCAGGGCGAGG 40015 ||||||||||||||||||| Sbjct 15545 ATCCTGAAGCAGGGCGAGG 15563 >seq180984 Length=3934 Score = 86.0 bits (94), Expect = 2e-12 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 133 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCACTT 182 ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1750 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCATTT 1799 >seq193478 Length=10097 Score = 82.4 bits (90), Expect = 2e-11 Identities = 358/563 (64%), Gaps = 27/563 (5%) Strand=Plus/Minus Query 25261 CACCATCGGCGTCGATCGCGACGATATCGAGACCGACAATCTCGGGATTTACTCGCCGCT 25320 |||| | ||| || ||||||||| || | || ||| ||||| | | | ||| | Sbjct 8605 CACCGTGGGCATCAGCCGCGACGATTTCTCGGACGGCAAGCTCGGTCTGTTCAAACCGAT 8546 Query 25321 GTTCCAGGAAATGGGCCGCTCCGCCGGCTCGAAATGGGACATGCTCGTGTTCGAGCTCCT 25380 | || |||||||| || |||| || | | ||||| | || | ||| ||| || Sbjct 8545 GATCGCGGAAATGGCCCATACCGCGCGCCAGCACCCGGACACGATCATCTTCCCGCTGCT 8486 Query 25381 GAAGCTTGGCTTCGCGACCGAGTGCTATGACGGTCAGAACTTCTTCGACACCGATCACCC 25440 | | |||||| | | |||||||||||| ||| | |||||||| ||||| ||||| Sbjct 8485 GGCGGCGGGCTTCACCTCGCTGTGCTATGACGGGCAGTATTTCTTCGATACCGACCACCC 8426 Query 25441 CGTGCTCGACGAGGACGGGAAGACTGTCACCGT-CTCGAATACCGGTGG----------- 25488 |||| | |||||||||| | ||| |||| | || ||| | Sbjct 8425 GGTGCGCAACGAGGACGGCACGACCTTCACGATGGTCATTAACCTGNNNNNNNNNNNNNN 8366 Query 25489 -------CGGCACGGGGACGCCCTGGTTCCTGCTCGACACCACGCGGGCGCTCAAGCCGA 25541 ||| || || |||||| ||||| ||||||||||| || || ||| Sbjct 8365 NNNNNNCCGGACCGTTCCCGGCCTGGTATCTGCTGGACACCACGCGCGCCATCCGCCCGC 8306 Query 25542 TCATCCTGCAGAAGCGCCGGGACTT-CCAGTTCGTCTCGAAGACCAAGCTCGATGATGAC 25600 ||||| |||| | || || | ||| | ||||| | || ||| |||||| || Sbjct 8305 TCATCTGGCAGGAACG-CGAGCCTTACGAGTTCACCCAGATCACCCGCGCCGATGACGAA 8247 Query 25601 CACGTCTTCATGAACAAGGAATTCCTCTATGGC--ACGGATGCCCGCGCCAATGTCGGCT 25658 | || ||||||| | | | | ||||||||| ||| || || ||||||| ||||| Sbjct 8246 CGGGTGTTCATGACCGACAACTATCTCTATGGCGTCCGG--GCACGAGCCAATGCCGGCT 8189 Query 25659 TCGGGTTCTGGCAAATGGCCTACGGCTC-CAAGCAGACGCTCGATGGCACGGCCTATGCT 25717 || | |||||| ||||| | | ||| | || | |||| || | || |||||| Sbjct 8188 ATGGCCTGTGGCAACTGGCCCATGCCTCGCGCGC-GCCGCTGGACGAGGCGAACTATGCC 8130 Query 25718 GCGGCTCGTGCGGCGCTCTCGGGCATGAAGGGTGACTATGGTCGCCCGCTCGGGCTGATG 25777 ||| || || ||| | | ||||| ||| | || || | ||| ||| | | Sbjct 8129 CTGGCCCGCGCCGCGATGATGAAGCGCAAGGGCGACAAGGGCCGGCTGCTTGGGGTCAAC 8070 Query 25778 CCGAACCTGCTGGTCGTGCCGCC 25800 || ||| | ||||| |||||||| Sbjct 8069 CCCAACGTCCTGGTGGTGCCGCC 8047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128274741009012