Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq55252 645 2e-180 >seq55252 Length=1842 Score = 645 bits (714), Expect = 2e-180 Identities = 713/949 (75%), Gaps = 6/949 (1%) Strand=Plus/Minus Query 59263 CGTGCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTG 59322 || || |||||||||||||| | ||||| ||||| || |||||||||||||| || Sbjct 1765 CGGGCGATCAACTGGAACCGGCTTGAGGACGAGAAGGACCTGGAGGTCTGGAACCGCCTG 1706 Query 59323 ACCAACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGC 59382 || |||||||||||||| || ||| | || | || || ||| | | ||||| | Sbjct 1705 ACGGTGAACTTCTGGCTGCCCGAAAAGGTGCCGCTGTCGAATGACGTGCAAAGCTGGGCC 1646 Query 59383 ACGCTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTC 59442 |||||| || ||||| || || || || ||||| ||||| |||||| |||| Sbjct 1645 ACGCTGCGCCCGGCCGAGCAGACGCTGACCATCCGCGTCTTTACCGGGCTGACGCTGCTT 1586 Query 59443 GACACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCAC 59502 |||||||||||| |||||| || || |||| || ||||| | || |||||| Sbjct 1585 GACACGATCCAGAACACCGTTGGCGCGCCCTCGATGATGCCCGACGCCGTGACCCCGCAC 1526 Query 59503 GAGGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGC 59562 || ||||||||| |||||||||| ||||||||| ||||||||||| ||||| Sbjct 1525 GAAGAGGCGGTGCTTTCGAACATCGCCTTCATGGAGGCGGTGCACGCGCGCAGCTATTCG 1466 Query 59563 AACATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAG 59622 ||||| |||||||||||| ||||||| ||||||| ||| ||||||||| | ||| Sbjct 1465 TCGATCTTTTCGACGCTGTGCAGCACCAAGGAAATCGACGAGGCCTTCCGCTGGGCCGAG 1406 Query 59623 GAGAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGG---GTGAC 59679 ||||| ||| | |||||| |||||| | | | || || || | ||| ||| | | | Sbjct 1405 GAGAACCCGCATCTGCAAGCCAAGGCGCGGCTGGTGCTTGAGAAATACAAGGCCGGCGCC 1346 Query 59680 GATCCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGC 59739 |||||||||||||| ||| | |||||| ||| ||||| | ||| ||||||| |||||| Sbjct 1345 GATCCGCTGAAGCGCAAGATCGCCTCGGTGTTCCTGGAAAGCTTCATGTTCTATTCGGGC 1286 Query 59740 TTCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATC 59799 ||||| ||||| ||||||||||| || || | ||||||||| ||||| |||||| ||||| Sbjct 1285 TTCTATCTGCCCATGTACTGGTCGAGCCGCGCGAAGCTGACCAACACCGCCGACCTGATC 1226 Query 59800 CGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGC 59859 || || ||||| || |||||||||||||| ||||| |||||||| ||||| | ||||||| Sbjct 1225 CGTCTGATCATCCGCGACGAGGCGGTGCATGGCTATTACATCGGCTACAAATACCAGCGC 1166 Query 59860 GGCCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTG 59919 || || ||| ||| | ||||||| || ||| |||| || ||||||| | | | | ||| Sbjct 1165 GGGCTTGAGGCTCTGGACGAGGCCCGGCGCCAGGAACTCAAGGACTTCGCCTTTGCGCTG 1106 Query 59920 CTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGA 59979 | |||| | ||||||| |||| | ||||| || || ||||||||| | || Sbjct 1105 ATGTTCGATCTTTACGACATCGAGGCGAAATACACCGCCGAGCTTTACGACGGCATCGGC 1046 Query 59980 CTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTC 60039 ||||| ||||| |||||| ||||||| |||||||||||||||||| ||| ||| || Sbjct 1045 CTGACCGAGGACGTCAAGGCCTTCCTGCACTACAACGCCAACAAGGCCCTGCAGAACCTG 986 Query 60040 GGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCA 60099 |||||||||||||||||||||| | | | |||||| ||| |||||||| |||| || Sbjct 985 GGCTACGAGGCGCTGTTCCCGCCCCAGGCCTGCGAGGTCAATCCGGCGATCCTGGCCGCG 926 Query 60100 CTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTG 60159 || || || | | | ||| |||||||||||||||||||| || || | ||||| Sbjct 925 CTTTCGCCCGACAG---CGAAAACCACGACTTCTTCTCGGGGTCGGGGTCGAGCTATGTC 869 Query 60160 ATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTAGTCCC 60208 || |||||||| | | || || || |||||||||||||||| |||| Sbjct 868 ATCGGCAAGGCGGTCGCGACCGAGGATGAGGATTGGGACTTCTGATCCC 820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258222796765032