Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021301.1 Length=56279 Score E Sequences producing significant alignments: (Bits) Value seq208634 210 8e-50 >seq208634 Length=57299 Score = 210 bits (232), Expect = 8e-50 Identities = 323/457 (71%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 43244 ACAACGACTGCGTGCCCGAAACCGAGTCCATGGGCGACAGCTCGGTGGACCTGATTGTCA 43303 |||||||||||||| |||| ||| ||||||| ||| ||||||| | ||||| |||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 43304 CCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACA 43363 || || |||||| || ||| ||||| |||| |||| ||| |||||||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 43364 CCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCA 43423 |||||||| ||| |||||||||| |||||||| || || || | ||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 43424 TCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACG 43483 | || | ||||||||| ||| || ||||||||||||||| ||| | || | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 43484 TCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGA-GGCGATC-----TTCC 43537 ||| ||| ||| | | || | || || | ||| || ||| | |||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCC 42954 Query 43538 ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTGC 43597 | || || ||||| | ||| |||||||||| ||| | ||| || ||||||| Sbjct 42955 AGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGC 43008 Query 43598 GGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGA 43657 | || ||||||||||| || || ||||||||| | ||||| ||||| |||| | | | Sbjct 43009 GCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCA 43068 Query 43658 TGGG-TGTCGGCTCCCCGGAATACGTTCTGCTGTTCC 43693 |||| ||| ||| ||||||||| | ||| | |||| Sbjct 43069 TGGGCTGT-GGCGTGCCGGAATACCTGCTGATCTTCC 43104 Score = 82.4 bits (90), Expect = 3e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42279 CGACGGCGTGCCCTATCGGTTTGTCGCCACCGCGACGCCGTCTCCGAATCGCTTCAAGGA 42338 ||| ||||| |||||||| ||||||||||| || ||||| ||||| || || || Sbjct 41102 CGAGGGCGTCCCCTATCGCTTTGTCGCCACGGCCACGCCAAGCCCGAACGACTACATCGA 41161 Query 42339 GCTGATCCACTACGCGGGCTATCTCGGTGTGATGGACACCGGCGCAGCGTTGACGCGTTG 42398 |||| | ||| || |||| |||| |||||||| | |||| || ||| || | Sbjct 41162 GCTGCTGTCCTATGCCGGCTTCCTCGACGTGATGGATATCGGCCAGGCCAAGACCCGGTT 41221 Query 42399 GTTCCAGCGGGACTCCACGAAGGCGAACAACCTCACCCTCTATCCCCACAAGGAGCGTGA 42458 || |||| || | |||||| |||| |||||| | ||||||| || ||||| || Sbjct 41222 CTTTAAGCGCAACAGCGAGAAGGCCGACAAACTCACCTTGCATCCCCATAAAGAGCGGGA 41281 Query 42459 GTT 42461 || Sbjct 41282 ATT 41284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179491446497844