Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq31122 179 1e-40 >seq31122 Length=1901 Score = 179 bits (198), Expect = 1e-40 Identities = 232/316 (73%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40777 |||||| | ||||||||| ||||| ||| ||| |||||||||||||| | || Sbjct 131 GATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGATCACCTCCTCGCG 190 Query 40778 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40835 || || || |||||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 191 GCGATCCATGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACCCGCTCCGGGTTCAGG 248 Query 40836 AACCGCTCGAAGATGAGCCCGT-GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40894 || || ||||| | || | || || | || ||||||||||||||||| || | || Sbjct 249 AAGCGTTCGAACAGCAGGCTGTAGCGCAAG-GGGTCGAGGTCGGTGATGGTCAGCGCATA 307 Query 40895 GGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTT 40954 ||| ||||||||||| || | ||||| ||||| || |||||| || ||||| ||||| Sbjct 308 GGCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGATGCCGTGGTCCTT 367 Query 40955 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 41014 ||||| |||||| || || |||| ||||| || || ||||||||||| ||| Sbjct 368 GGCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGCCCATCTGCTCGAT 427 Query 41015 CATGTCGATCTCGTAC 41030 ||| | | |||| || Sbjct 428 GATGCCCAGCTCGAAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164405369301576