Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021311.1 Length=76479 Score E Sequences producing significant alignments: (Bits) Value seq184921 286 2e-72 >seq184921 Length=9366 Score = 286 bits (316), Expect = 2e-72 Identities = 517/754 (69%), Gaps = 9/754 (1%) Strand=Plus/Minus Query 66684 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66743 |||||||| | | || ||| ||| ||||| ||||| || || | |||||| | Sbjct 5033 ACCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGCCGCATC 4974 Query 66744 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66803 | || |||| |||||| ||| || || ||| | || ||| || || | ||||||| Sbjct 4973 ATCGAGATCTTCGGCCCGGAAAGCTCGGGCAAGACCACGCTGACGCTGCATGTGGTGGCC 4914 Query 66804 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66863 | | |||||| || ||| | ||||| | ||||||| || ||| | ||||| || Sbjct 4913 GAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGACGCCGAACACGCGCTGGATCCG 4854 Query 66864 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 66923 | ||||||||| ||| || ||| |||| ||| | ||| || | ||||| ||||| Sbjct 4853 CAATACGCCAAGAAGCTGGGCGTGAACCTGGACGAACTCCTGATCAGCCAGCCCGACACG 4794 Query 66924 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 66983 ||||| ||||| ||||||||||| ||| || || || |||| | || | | || Sbjct 4793 GGCGAACAGGCGCTGGAGATCGTCGACACGCTGGTGCGCTCGGGCGCGGTGAACCTGGTG 4734 Query 66984 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 67043 || || ||||| || ||||| ||| ||| ||||| |||| |||||||| || ||| Sbjct 4733 GTGGTCGACTCGGTCGCGGCGCTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGAC 4674 Query 67044 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACCGGCACC 67103 | || | ||| || || ||||| ||| ||||| ||||||||||| |||| || | Sbjct 4673 ATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGATGCGCAAGCTGACCGCCAGC 4614 Query 67104 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 67163 ||| | | | ||| || | ||| |||||||| | ||| ||||||||| | Sbjct 4613 ATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGG---C 4557 Query 67164 GTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCC 67220 ||| | ||| |||| || ||||| || || ||||| || ||| |||||||||| Sbjct 4556 GTGATGTTCGGCAACCCG---GAAACCACGACCGGGGGCAACGCGCTGAAGTTCTACGCC 4500 Query 67221 TCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGC 67280 || ||||| | || |||| |||| || | | ||||| | || |||| |||||| Sbjct 4499 TCGGTCCGGCTCGACATCCGCCGCACCGGCGCGATCAAGGACCGGGACGAGGTGGTCGGC 4440 Query 67281 AACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAG 67340 ||| |||||| || ||||| |||||||||||| | || ||||| |||| | | |||| Sbjct 4439 AACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCCGCCAGGTCGAG 4380 Query 67341 TTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 67400 ||| | || |||| || ||||| ||||| | | ||| | ||||||||| | | Sbjct 4379 TTCGACATCATGTATGGCGAGGGGATCTCCAAGGTCGGCGAGTTGATCGACCTGGGCATC 4320 Query 67401 TCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 67434 | ||| |||| |||| ||||| |||||| Sbjct 4319 AAGGCCGGCGTGGTCGAGAAATCGGGGTCCTGGT 4286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243938783240880