Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq199897 111 5e-19 >seq199897 Length=5656 Score = 111 bits (122), Expect = 5e-19 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 3242 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 3183 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 | ||| || || | | | ||| |||| ||||| ||||||| ||| || | | Sbjct 3182 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCACGCGACTCCGGACCAAAG 3123 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| ||| |||||| ||||| || | || ||| | | ||||| ||||| || Sbjct 3122 TCGTCCTTCACAAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGCCC 3063 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCT 302857 || ||||||||||| |||| ||| | || || |||||| || || ||| | | |||| Sbjct 3062 TCGACGTTCTGCTGACCCACGCAGGCAAGCACCTGCGAGATGTT--GATCGCCGAACCCT 3005 Query 302858 TGGAGCCAGCATTTACCAT 302876 |||| || ||| | ||||| Sbjct 3004 TGGACCCGGCAATCACCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467584394094434