Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq31122 174 5e-39 >seq31122 Length=1901 Score = 174 bits (192), Expect = 5e-39 Identities = 231/316 (73%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 |||||| | ||||||||| ||||| ||| ||| |||||||| ||||| | || Sbjct 131 GATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGATCACCTCCTCGCG 190 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 || || || |||||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 191 GCGATCCATGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACCCGCTCCGGGTTCAGG 248 Query 40296 AAGCGCTCGAAGATGAGCCCGT-GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA 40354 ||||| ||||| | || | || || | || ||||||||||||||||| || | || Sbjct 249 AAGCGTTCGAACAGCAGGCTGTAGCGCAAG-GGGTCGAGGTCGGTGATGGTCAGCGCATA 307 Query 40355 GGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTT 40414 ||| ||||||||||| || | ||||||||||| || |||||| || |||| ||||| Sbjct 308 GGCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGATGCCGTGGTCCTT 367 Query 40415 CGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGAT 40474 ||||| |||||| || || |||| ||||| || || || |||||||| ||| Sbjct 368 GGCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGCCCATCTGCTCGAT 427 Query 40475 CATGTCGATCTCGTAC 40490 ||| | | |||| || Sbjct 428 GATGCCCAGCTCGAAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162889421201676