Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq194362 100 3e-16 seq186304 100 3e-16 seq180639 100 3e-16 seq180638 100 3e-16 seq193470 86.0 7e-12 >seq194362 Length=24653 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 20894 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 20953 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 20954 CCGTTAGGCTCCA 20966 >seq186304 Length=18897 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 15138 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 15197 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 15198 CCGTTAGGCTCCA 15210 >seq180639 Length=8005 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2212 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 2271 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 2272 CCGTTAGGCTCCA 2284 >seq180638 Length=39462 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 3760 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 3701 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 3700 CCGTTAGGCTCCA 3688 >seq193470 Length=9340 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 4938 TAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCCCCTC 4994 ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||| Sbjct 1520 TAGCTCAGCGGTAGAGCGACACGTTTACACCGTGTTGGTCGGGGGTTCGATCCCCTC 1464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548080145805040