Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021538.1 Length=59626 Score E Sequences producing significant alignments: (Bits) Value seq208634 197 5e-46 >seq208634 Length=57299 Score = 197 bits (218), Expect = 5e-46 Identities = 322/457 (70%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 46527 ACAACGACTGCGTTCACGAAACCAAGAGCATGGCAGACGATTCGGTGGATCTGATCGTCA 46586 ||||||||||||| ||| ||| |||||| || | |||||| | |||||||||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 46587 CCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACA 46646 || || |||||| || ||| ||||| |||| |||| ||| |||||||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 46647 CCGACAACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCA 46706 ||||| || ||| ||| |||||||||||||||| || || || | ||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 46707 TCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACG 46766 | || ||||||||| ||| || ||||||||||||||| ||| | || | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 46767 TCACCGGCGCCGGCGTGCCCACGGTGTC-ACCCTTC-CACG----CCGAG-GCGATCTTC 46819 ||| ||| ||| | | || | || || || | || | || | |||| ||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGA-GTTC 42953 Query 46820 CACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCATCACCGATGTGGTC 46879 || ||| || ||||| | ||| |||||||||| ||| ||| ||| || ||||| Sbjct 42954 CA---GCGC---CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTG 43007 Query 46880 CGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAG 46939 || || ||||||||||| || || ||||||||| | ||||| ||||| |||| | | Sbjct 43008 CGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGC 43067 Query 46940 ATGGGCGTCGGCTCCCCGGAATACATTCTGTTGTTCC 46976 |||||| ||| ||||||||| | ||| | |||| Sbjct 43068 ATGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCC 43104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190173295530192