Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq192389 228 2e-55 >seq192389 Length=20641 Score = 228 bits (252), Expect = 2e-55 Identities = 410/591 (69%), Gaps = 11/591 (2%) Strand=Plus/Plus Query 36172 TGCTCCGGCTGCACCTGCCGCTCCTTACATCGGTGGCAAGCGCGTTCTCTCAAAGATCAT 36231 ||| ||| | || || | |||||| | | || |||||||| ||| | ||| ||| Sbjct 5876 TGCCCCGACCGCCCCCGTCGCTCCCTGGCTGGGCGGCAAGCGTAACCTCGCGAAGCGCAT 5935 Query 36232 CATCGCCAAGATCAACGCAACACGTCATGAGGGT--TATGCGGAAGTCTTCGTCGGTATG 36289 | | ||| ||| |||| || | | || | | ||||| || |||||| || ||| Sbjct 5936 CTGCACCATCATCGACGCTACGC--CCTGCGTGACCTATGCCGAGCCCTTCGTGGGCATG 5993 Query 36290 GGTGGCGTCTTCCTCCGCCGT--GATCTCCAGCCTCGTATTGAAGTCATCAACGATATCA 36347 || ||| ||||||| |||||| || ||| ||| | || || |||||||| | Sbjct 5994 GGCGGCATCTTCCTGCGCCGTTCGA-CTCG-GCCCAGGGCCGAGGTGATCAACGACCGCG 6051 Query 36348 GCGGCGATGTGGCTAATCTGTTCCGTATTCTCCAGCGCCACTATCCGCAGTTTATGGAAA 36407 || |||| | || || |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 6052 GCCGCGACATCGCCAACCTGTTCCGCATCCTCCAGCGCCACTATCCCCAGTTCCTGGAAT 6111 Query 36408 CCCTTCGGTTCCAGATCACGTCACGACGCGAGTTCGAACGGCTCTCGAAAGTCGATCCTT 36467 ||| || |||||| | || | || ||||||||| || || || |||||||| Sbjct 6112 GCCTGCGCTTCCAGCTGACCACGCGGGCCGAGTTCGAGCGCCTGGTCAAGGTCGATCCCG 6171 Query 36468 CGACGCTAACCGACCTGGAGCGCGCCGCTCGCTTCCTCTATCTCCAGCGCACTGCCTTCG 36527 || || |||||||| |||||||| || || |||||||||||||||||||| ||||| | Sbjct 6172 ACACCCTGACCGACCTCGAGCGCGCGGCCCGGTTCCTCTATCTCCAGCGCACAGCCTTTG 6231 Query 36528 GCGGTAAGGTTGCGGGGCAAAACTTCGGCGTGACG-ATGACCGGC--GCTCGCTTCAATC 36584 |||| |||||| |||| | |||||||| ||| || || |||| | || ||||||| Sbjct 6232 GCGGCAAGGTTTCGGGCCGCAACTTCGGTGTGGCGCGCGAGCGGCCGGGCCGGTTCAATC 6291 Query 36585 TTCTGAAACTCGCCCCCCAACTGGAAGCGATCCACGAGCGGATGGCAGGTGTTGTCATCG 36644 | | |||| ||| ||||| | | ||| || |||| || || || |||| Sbjct 6292 TGACCACGCTCGAGCCCATGCTGGAGGATCTGCACAGCCGTCTGGCCGGCGTGGTGATCG 6351 Query 36645 AGCAGTTGCCATGGCGAAAATTTGTCGAGCGCTATGATCGGCCGGGGATGCTTTTTTATC 36704 || || ||| || || ||||||||| | |||| || ||| || |||| Sbjct 6352 AGTGCCTGGACTGGTCGGCCTTCATCCCGCGCTATGACAGCCCGGAGACGCTGTTCTATC 6411 Query 36705 TCGATCCGCCCTATTGGGGGAATGAGAAGGACTATGGCACGGGCGTATTCG 36755 ||||||||||||||||||| ||| | || || |||| || | | |||| Sbjct 6412 TCGATCCGCCCTATTGGGGCTGCGAGGACGATTACGGCAAGGCCATGTTCG 6462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119169478000560