Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq222267 82.4 6e-11 >seq222267 Length=3969 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 162 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 103 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | || ||||||| ||||| | | || | ||||| ||| Sbjct 102 CACTTCAACCCCTTCGGTAAGAAGCACGGTGGACCCGAGGATGAGGAGCGTCACGTTGGC 43 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 42 GATCTCGGCAACGTC 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411712117245626