Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq184921 232 3e-56 >seq184921 Length=9366 Score = 232 bits (256), Expect = 3e-56 Identities = 469/693 (68%), Gaps = 15/693 (2%) Strand=Plus/Minus Query 67574 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 67633 ||||||||| | | || ||| ||| || || ||||| || || | |||||| | Sbjct 5033 ACCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGCCGCATC 4974 Query 67634 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 67693 | ||||||| ||| || || || || ||| | ||| || || || | ||||||| Sbjct 4973 ATCGAGATCTTCGGCCCGGAAAGCTCGGGCAAGACCACGCTGACGCTGCATGTGGTGGCC 4914 Query 67694 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 67753 | | |||||| || ||| | ||||| | ||||||||||||| | || || || Sbjct 4913 GAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGACGCCGAACACGCGCTGGATCCG 4854 Query 67754 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 67813 | |||||| | ||| || ||| | | ||| | ||| || | ||||| ||||| Sbjct 4853 CAATACGCCAAGAAGCTGGGCGTGAACCTGGACGAACTCCTGATCAGCCAGCCCGACACG 4794 Query 67814 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 67873 ||||| ||||| ||||||||||| ||| || || || |||| ||| | | | Sbjct 4793 GGCGAACAGGCGCTGGAGATCGTCGACACGCTGGTGCGCTCGGGCGCGGTGAACCTGGTG 4734 Query 67874 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 67933 || || ||||| || ||||| ||| ||| | | ||| |||| || ||||| || ||| Sbjct 4733 GTGGTCGACTCGGTCGCGGCGCTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGAC 4674 Query 67934 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 67993 ||| | ||| || |||||||||||| ||||| |||||||||||||||| || Sbjct 4673 ATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGATGCGCAAGCTGACCGCCAGC 4614 Query 67994 ATTGCCAGCACCAA---CACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGC 68050 || | | | | || || | | | | | | || ||| | ||| ||||||||| Sbjct 4613 ATCGGCCGGTCGAACTGCATGGTGA---TCTTCATCAACCAGATCCGCATGAAGATCGG- 4558 Query 68051 AACGTGGGCTACGG---CCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTAC 68107 |||| | ||| |||| || ||||| ||||| || || || ||| |||||| Sbjct 4557 --CGTGATGTTCGGCAACCCG---GAAACCACGACCGGGGGCAACGCGCTGAAGTTCTAC 4503 Query 68108 GCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 68167 |||||||| || | || ||||| | | || | | ||||| | || |||| ||| Sbjct 4502 GCCTCGGTCCGGCTCGACATCCGCCGCACCGGCGCGATCAAGGACCGGGACGAGGTGGTC 4443 Query 68168 GGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCT 68227 |||||| ||| ||||| ||||| |||||||||||| | ||||| || |||||||| Sbjct 4442 GGCAACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCCGCCAGGTC 4383 Query 68228 GAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 68260 ||||| |||| | || |||||||| || ||| Sbjct 4382 GAGTTCGACATCATGTATGGCGAGGGGATCTCC 4350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246772608980256