Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq196825 129 4e-25 seq197527 96.9 2e-15 >seq196825 Length=18748 Score = 129 bits (142), Expect = 4e-25 Identities = 192/267 (72%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 95893 CATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCACCGCAGCGTCTTAACCGCCT- 95951 |||| | || || || || |||||||| || || ||| ||||| | ||||||| Sbjct 17929 CATCCGGCGATAGCGCTCCTCCATCTCTCCGACGACCCATTTCAGCGCCACGACCGCCTT 17988 Query 95952 CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTT 96011 | ||||| |||||||| |||||| || ||| || || || || | ||| | | || Sbjct 17989 CTTCGGG-TCGGTGACGACCGGCGACAGAAGATGCGGAATCCCATCGTAAACAGACAATT 18047 Query 96012 CCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTG-GCTCGGTAGAGC 96070 ||| |||||| |||||||||||||| ||| | | | || || | ||| | |||||| Sbjct 18048 CCAGCATCTTGGGGTCGATCATGATCAGCCGGCACTGCTCGGGTGTCAGCTTG-TAGAGC 18106 Query 96071 ATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACC 96130 | | | | ||| | ||||||| | ||||||||||| ||||||| || || | | Sbjct 18107 AGGCTCAGGATCATGGTGTTGATGGCGACCGACTTGCCCGAGCCGGTGGTCCCCGCGATC 18166 Query 96131 AGCAGGTGGGGCATTTTGGCCAGGTTC 96157 |||||||||||||| |||||||||||| Sbjct 18167 AGCAGGTGGGGCATCTTGGCCAGGTTC 18193 Score = 104 bits (114), Expect = 2e-17 Identities = 121/163 (74%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 95693 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCTGCG 95752 || |||| ||||| || || |||||||||||||||| || ||| || |||||| || Sbjct 17615 CCGGTGATGACATCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATGCCGCTGGCC 17674 Query 95753 CGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATC 95812 |||||| |||| || | || |||| ||||||| ||| |||| || ||||| Sbjct 17675 CGCGCCATCTGCGCAAGCCGTTGAATGCACGCCTCGATTTC---CTTGCCCGCGACCATC 17731 Query 95813 ATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGGGA 95855 || ||||| |||| ||||||||| | || ||||| ||||||| Sbjct 17732 ATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 17774 >seq197527 Length=40067 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6214 GAGATCGCGATGTGGTTCCGCATCCCGCCGCACATGATCGGCGATACGGAAAAGTCCACC 6273 || ||||| |||| ||| | ||||||| |||||||||||||| || || |||||||| Sbjct 27322 GACATCGCCATGTTCTTCGGGGTCCCGCCCCACATGATCGGCGACACCGAGAAGTCCACG 27263 Query 6274 TCCTGGGGCACGGGCATTGAGCAGCAATCCATCGGATTCGTTACATACACCCT 6326 ||||||||| ||||| |||||||| || ||||| || || | ||||| || Sbjct 27262 AGCTGGGGCACCGGCATCGAGCAGCAGTCGATCGGCTTTGTCGCCTACACGCT 27210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350784863849042