Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq224298 82.4 7e-11 seq183361 82.4 7e-11 seq179713 82.4 7e-11 seq178618 82.4 7e-11 >seq224298 Length=3023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 2718 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 2659 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 2658 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 2601 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 2600 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 2541 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 2540 ACGGCGCGGCC 2530 >seq183361 Length=1018 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 671 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 730 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 731 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 788 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 789 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 848 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 849 ACGGCGCGGCC 859 >seq179713 Length=801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 454 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 513 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 514 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 571 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 572 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 631 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 632 ACGGCGCGGCC 642 >seq178618 Length=1047 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117487 GAGGCCAAGGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGAC 117546 ||||| || ||||| |||| || |||||||| | ||||| ||| || | | ||| Sbjct 700 GAGGCGCAGTTCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGAC 759 Query 117547 AAGG-CCAC-CGTCCGCTGCCGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGG 117604 ||| |||| || |||| || ||| | | | |||| ||||| || |||| Sbjct 760 AAGATCCACTCGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCCGTGGAGG 817 Query 117605 GCCGCAAGCGCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGC 117664 |||| ||||| || || ||| |||||| ||||||||||| |||||||| ||| | | Sbjct 818 GCCGATCGCGCGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCC 877 Query 117665 ACGGCGCGGCC 117675 ||||||||||| Sbjct 878 ACGGCGCGGCC 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474705815369360