Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq223142 93.3 3e-14 seq190944 91.5 1e-13 seq223622 89.7 4e-13 seq207513 87.8 1e-12 seq177117 87.8 1e-12 seq194102 84.2 2e-11 seq176952 82.4 6e-11 >seq223142 Length=9055 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||||||| |||| ||| | || Sbjct 6326 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 6267 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || |||||| || || || ||| | || |||||| Sbjct 6266 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 6207 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 6206 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 6147 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 6146 ATCCAGAAGGAGTCCACGCTCCAC 6123 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| |||| ||| | Sbjct 7004 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCGTC 6945 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | ||| ||||| Sbjct 6944 CGACACAATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 6885 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 6884 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACTACAA 6825 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 6824 CATCCAGAAGGAGTCCACGCTCCAC 6800 >seq190944 Length=484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGGCG 107616 ||| || || ||||| || | || ||||| ||||||||| |||| ||| ||| | | Sbjct 1 GCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATTACCCTCGAGGTCGAGAGCTCG-G 59 Query 107617 ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGC 107676 | || ||| | || || || ||||| || || |||||| | ||| |||||||| Sbjct 60 ACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAGC 119 Query 107677 AGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACA 107736 || | || || | || || || ||||| ||||||| | || |||| |||||||||| Sbjct 120 AGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAACA 179 Query 107737 TTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | || |||||||| || | ||| | ||| Sbjct 180 TCCAGAAGGAGTCGACTCTCCACCTCGTG 208 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| || || || |||| ||| | || Sbjct 227 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCCAGC 286 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 287 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 346 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| ||||||||| Sbjct 347 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 406 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 407 ATCCAGAAGGAGTCGAC 423 >seq223622 Length=3914 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 2599 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGTCGAGC 2540 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | ||||| || ||||| || || || ||| | ||| || ||| Sbjct 2539 GACACGATCGAGAACGTAAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 2480 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 2479 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2420 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 2419 ATCCAGAAGGAGTCCACGCTCCAC 2396 >seq207513 Length=1179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || || || || | || ||||| ||||| ||| |||| ||| | Sbjct 804 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 863 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||||| || || || ||| | ||| || || Sbjct 864 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 923 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 924 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCTGACTACAA 983 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 984 CATCCAGAAGGAGTCGAC 1001 >seq177117 Length=2010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 || ||||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | Sbjct 1241 TACAATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTC 1300 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 ||| || ||| | || || ||||||||| || || || ||| | ||| || Sbjct 1301 GTCCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCCCCCGA 1360 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | || || | || || || ||||| ||||||| || | || ||||| Sbjct 1361 TCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTA 1420 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| || Sbjct 1421 CAACATCCAGAAGGAGTCCAC 1441 >seq194102 Length=976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| || || ||| |||| ||| | || Sbjct 285 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGTCCAGC 226 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || || | ||| |||||| Sbjct 225 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 166 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 165 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 106 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || ||||||||||| ||| | ||| Sbjct 105 ATCCAAAAGGAGTCCACGCTCCAC 82 >seq176952 Length=5663 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 917 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 976 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || |||||| || || || ||| | ||| || || Sbjct 977 CGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1036 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||||| || ||||| ||||||| | || | || |||||||| Sbjct 1037 GCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 1096 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1097 CATCCAGAAGGAGTCCAC 1114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397785523184098