Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq203637 95.1 9e-15 seq194102 89.7 4e-13 seq223622 82.4 6e-11 >seq203637 Length=1734 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || || || || || || ||||| || || || Sbjct 1544 CCGCCACGCAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 1485 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || ||||| | || | | |||||||| || ||| Sbjct 1484 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGGA 1425 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| ||||| | || | ||||| || || || Sbjct 1424 ATACCCTCCTTGTCCTGAATCTTTTGCTTGACGTTCTCGATCGTGTCCGAGCTCTCCACC 1365 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 1364 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1318 >seq194102 Length=976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || |||||||| || ||||| ||||| || || || Sbjct 59 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCC 118 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || ||||| || | || | | |||||||| || ||| Sbjct 119 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 178 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || | || | || || || || Sbjct 179 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACC 238 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || | ||| || || || |||||||| Sbjct 239 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 >seq223622 Length=3914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||| || || || || || ||||| || || || | ||||| Sbjct 1858 CGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 1917 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || ||||| | || | | ||||| || || ||||||||||| ||| Sbjct 1918 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTG 1977 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || || | || | ||||| || || || || || || || Sbjct 1978 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTAATC 2037 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 2038 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384165288661962