Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023502.1 Length=109558 Score E Sequences producing significant alignments: (Bits) Value seq192389 96.9 2e-15 >seq192389 Length=20641 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 34799 GCCAATGACCCGGCGACCCGCATCAATGC--GCA-GTCCACCCAGATCGACCCAGGCAAA 34855 ||| | |||||| | || | ||||| || ||| | ||||| |||||||| ||||| Sbjct 3423 GCCCAGGACCCGACTGCCAGGATCAACGCCGGCACGACCACC---ATCGACCCCGGCAAG 3367 Query 34856 ATCCTGATCTCCGGCGCTACCACGCTGGCCTCTTGGCGCGACGGCACCGATACCACCTTG 34915 ||||| ||||| ||| | || || |||||| |||||| ||||||| | | |||| | Sbjct 3366 ATCCTCATCTCGGGCACCACGACCCTGGCCGACTGGCGCACCGGCACCAACAGCACCGAG 3307 Query 34916 ATCGCGGGCGGCAAGCTGTCGGCGAACAGCGTGACCGCCAACAAGCTCACTATCGGCGCT 34975 ||| |||||| | |||| || | ||| || ||||||||| | || ||||| Sbjct 3306 ATCAACGGCGGCGCCATCGCGGCCAATACCGTTACGGCCAACAAGATGACGATCGGGATG 3247 Query 34976 CGCGGCATCAACCTGGAGAACATCCAGTTC 35005 || ||| | |||| | |||||||||||| Sbjct 3246 CGGGGCGTGAACCCGACCAACATCCAGTTC 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349501983277838