Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023580.1 Length=57775 Score E Sequences producing significant alignments: (Bits) Value seq208634 188 3e-43 >seq208634 Length=57299 Score = 188 bits (208), Expect = 3e-43 Identities = 343/500 (69%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 45205 CGAACGAATCGAAGCATCCGGCGAGGGCTGGCTGTTCGCCAACAACGACTGCGTACCCGA 45264 ||| || |||| || || ||| || || | | || | ||||||||||||| |||| Sbjct 42614 CGAGCGGGTCGAGGCCTCGGGCCCGGACTATCGCTGCGTCCACAACGACTGCGTGGCCGA 42673 Query 45265 AACCGAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGTATTCCGTTCTCCAA 45324 ||| || |||| ||| ||||||| | |||||||||||| || |||||| || Sbjct 42674 GACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCACCTCGATCCCGTTCAGCAC 42733 Query 45325 TCACTACGAATACACCCCGTCCTACAACGACTTCGGTCACACCGACGACAACGCGCATTT 45384 || |||||||||| |||| ||| ||||||||| |||||||||||| ||| |||||| Sbjct 42734 CCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACACCGACGACGACGGGCATTT 42793 Query 45385 CTGGGCGCAAATGGACTACCTCACACCGCAACTGTTGCGCATCCTTGCGCCCGGGCGGAT 45444 |||| ||| |||| || || || ||||| ||||| | || | ||| || ||||| Sbjct 42794 CTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCGTTCTGGAGCCGGGCCGGAT 42853 Query 45445 CTACGCCTGCCACGTCAAAGACCG---CATCTTGTTCGGCAATGTCACCGGCGCTGGCGT 45501 | || ||||||||| ||||| |||| | ||||| ||| ||| || | Sbjct 42854 CGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA---TCAACGGGTTCGGGTT 42910 Query 45502 GCCCACCGTGTCACCATTTCACGCCGA-AGCGATC-----TTCCACGGCCGCAAACACGG 45555 | ||| | || | | ||| || ||| | ||||| || || || Sbjct 42911 TCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCCAGCGC------CATGG 42964 Query 45556 CTTTGACTACCTCGGCATGATCACCGTTGTCACCGATGTGGTACGGGAAAACAACCAGAC 45615 ||||| ||| |||||||||| ||| | ||| || ||||| || || ||||||||||| Sbjct 42965 CTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGCGCGAGAACAACCAGAC 43024 Query 45616 GTACCGGTTGGGTTGGTCCGAGCAGTGCAAAGACGCCACCAAGATGGGCGTTGGCTCCCC 45675 || || |||| ||| ||||||| ||||| |||| | | |||||| |||| || Sbjct 43025 CTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCATGGGCTGTGGCGTGCC 43084 Query 45676 GGAATACGTTCTGCTGTTCC 45695 ||||||| | ||| | |||| Sbjct 43085 GGAATACCTGCTGATCTTCC 43104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184265885145108