Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023602.1 Length=50781 Score E Sequences producing significant alignments: (Bits) Value seq178390 120 1e-22 seq197527 80.6 9e-11 >seq178390 Length=32315 Score = 120 bits (132), Expect = 1e-22 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 6783 GGATCAACAGTCCCGGCGGGATCG-TGTTCGACGGGATCGCGATCATGAACGCGCTGAAG 6841 || ||||||| |||||||| |||| | ||||||| | | |||||| |||||||||||| Sbjct 4677 GGCTCAACAGCCCCGGCGG-ATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGAAG 4735 Query 6842 CGGCATCCGG-CGCGGATCGTCACCCGGATCGACGGGCTCGCCGCGTCGGCCGCGTCGTT 6900 || || || | ||| || | | |||||||||| ||||||| || ||||| || | Sbjct 4736 CGCCACGAGGGCACGG-TCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCATCCTA 4794 Query 6901 TATCGCGATGGCCGGCGACGAGATTCAGACGTCGAAGTATGCCGAGATGATGATTCACGA 6960 |||| ||||| ||||||||||| | | | || | ||| ||||||| ||||| Sbjct 4795 CGTCGCCATGGCGGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCCACGA 4854 Query 6961 AGCGCGCGGCGTCGTGATGGGAACGGCCGACGAC 6994 || |||| |||||||||| |||||||| ||| Sbjct 4855 CCCGGCCGGCCTCGTGATGGGCACGGCCGAGGAC 4888 >seq197527 Length=40067 Score = 80.6 bits (88), Expect = 9e-11 Identities = 121/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 6764 GCCGACGAGATCGTCGTCGGGATCAACAGTCCCGGCGGGATCGTGTTCGACGGGATCGCG 6823 |||||||||||| |||| ||||||| |||||||| | | ||||| || | ||| Sbjct 26075 GCCGACGAGATCACGGTCGACCTCAACAGCCCCGGCGGCGACTTCTTCGAGGGCGTGGCG 26016 Query 6824 ATCATGAACGCGCTGAAGCGGCATCCGGCGCGGATCGTCAC---CCGGATCGACGGGCTC 6880 ||| ||| |||| ||| || ||| | ||||| ||| ||| |||||| Sbjct 26015 ATCTACAACCTGCTGC-GCGAGGACCCACGC--AAGGTCACGGTCCGCATCCTCGGGCTT 25959 Query 6881 GCCGCGTCGGCCGCGTCGTTTATCGCGATGGCCGGCGACGAGATTCAGA 6929 ||||| || ||||| ||| | ||||| ||||||||||||||| | |||| Sbjct 25958 GCCGCCTCCGCCGCCTCGGTGATCGCCATGGCCGGCGACGAGGTCCAGA 25910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161944746175212