Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq197527 91.5 1e-13 seq196825 86.0 4e-12 >seq197527 Length=40067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 6203 GAGATCGCGATGTGGTTCCGCATCCCGCCGCACATGATCGGCGATACGGAAAAGTCCACC 6262 || ||||| |||| ||| | ||||||| |||||||||||||| || || |||||||| Sbjct 27322 GACATCGCCATGTTCTTCGGGGTCCCGCCCCACATGATCGGCGACACCGAGAAGTCCACG 27263 Query 6263 TCTTGGGGCACGGGCATTGAGCAGCAATCCATCGGATTCGTTACATACACCCT 6315 |||||||| ||||| |||||||| || ||||| || || | ||||| || Sbjct 27262 AGCTGGGGCACCGGCATCGAGCAGCAGTCGATCGGCTTTGTCGCCTACACGCT 27210 >seq196825 Length=18748 Score = 86.0 bits (94), Expect = 4e-12 Identities = 180/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 94809 CATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCACCGCAGCGTTTTCACCGCCTC 94868 |||| | || || || || ||||||||| || || ||| ||||| ||||||| Sbjct 17929 CATCCGGCGATAGCGCTCCTCCATCTCTCCGACGACCCATTTCAGCGCCACGACCGCCTT 17988 Query 94869 GTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTC 94928 | | || || || || ||| ||||| || || || || | ||| | | || Sbjct 17989 CTTCGGGTCGGTGACGACCGGCGACAGAAGATGCGGAATCCCATCGTAAACAGACAATTC 18048 Query 94929 GACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCA 94987 | ||| ||||||||||||||||| || | | | || || ||| | |||||||| Sbjct 18049 CAG-CATCTTGGGGTCGATCATGATCAGCCGGCACTGCTCGGGTGTCAGCTTGTAGAGCA 18107 Query 94988 GCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCA 95047 | | | ||| | ||||||| | ||||||||||| ||||| | || || | || Sbjct 18108 GGCTCAGGATCATGGTGTTGATGGCGACCGACTTGCCCGAGCCGGTGGTCCCCGCGATCA 18167 Query 95048 GCAGATGCGGCATCTTGGCCAGGTTC 95073 |||| || |||||||||||||||||| Sbjct 18168 GCAGGTGGGGCATCTTGGCCAGGTTC 18193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339191070030176