Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq183361 91.5 2e-13 seq178618 87.8 2e-12 >seq183361 Length=1018 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || ||||||| | || || || || || || Sbjct 110 CCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGCCAA-AAGGGTACGGTGGGCATCAT 168 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 169 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATCATCGTCA 227 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 228 ACCCGCACGCCATTCCCTCGCGAATGACCAT 258 >seq178618 Length=1047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || ||||||| | || || || || || || Sbjct 155 CCCCAGATCGGCGACAAGTTCAGTTCGCGCCATGGCCAA-AAGGGTACGGTGGGCATCAT 213 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| |||| |||| ||||| ||||||||||||||| | | Sbjct 214 GTACCGGCAGGAGGACATGCCCTTCAACATCGAA-GGCATCACCCCCGACATCATCGTAA 272 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| |||||||||| Sbjct 273 ACCCGCACGCCATTCCCTCGCGAATGACCAT 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520082130007760