Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq219951 84.2 7e-12 seq213761 84.2 7e-12 seq192107 84.2 7e-12 seq177172 84.2 7e-12 >seq219951 Length=2829 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 27 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 86 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | |||||| ||||| Sbjct 87 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTT 125 >seq213761 Length=3005 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 2610 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 2669 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | |||||| ||||| Sbjct 2670 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTT 2708 >seq192107 Length=2079 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 2053 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 1994 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | |||||| ||||| Sbjct 1993 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTT 1955 >seq177172 Length=603 Score = 84.2 bits (92), Expect = 7e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 22843 GTTTGGCTTGTGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAA 22902 ||| |||||||||||||||||||| ||| || ||||| |||||| | || || ||||| Sbjct 208 GTTGGGCTTGTGCCAGATGATGTCGGACCGCAGGTACCACCCGTCGGCTTGAAGGGCGAA 267 Query 22903 GGCCAGGCGCCAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 ||||| | ||| |||| || || | |||||| ||||| Sbjct 268 GGCCACCCTCCACGGCAGACCTATAAGGTCTTTGGGCTT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162930910307568