Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq190944 111 3e-19 seq223142 102 2e-16 seq100797 95.1 2e-14 seq215275 89.7 1e-12 >seq190944 Length=484 Score = 111 bits (122), Expect = 3e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 453 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 394 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || || || ||||| || | || || || || || Sbjct 393 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 334 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| ||||| || || ||||| | | || || Sbjct 333 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACATTCTCGATAGTATCGCTGGACTCGAC 275 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| |||||| ||||| |||||||| Sbjct 274 CTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 227 >seq223142 Length=9055 Score = 102 bits (112), Expect = 2e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| || || || || ||||| || || || || | Sbjct 4859 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4918 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| |||||| || || || || || || ||||| || | || || || ||||| Sbjct 4919 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 4978 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || || ||||| || |||||||| ||||| || || || ||||| || || | || | Sbjct 4979 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATCGTGTCCG-AGCTCTCGA 5036 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | |||||| || || |||||||| Sbjct 5037 CCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 5085 >seq100797 Length=331 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 82613 AGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 ||| || || ||||| || || || |||| || | | |||||| || || || || || Sbjct 331 AGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCC 272 Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT-TGCTT 82731 || ||||| || | || ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 271 GGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTT 212 Query 82732 TTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACG 82791 || || || ||||| || | || || || | || ||||||||||| || | | Sbjct 211 C-ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGG 153 Query 82792 TCTTTACAAATATCTGCAT 82810 |||| || || |||||||| Sbjct 152 TCTTGACGAAGATCTGCAT 134 >seq215275 Length=6875 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| || || ||||| || || || || | || | | ||| Sbjct 4236 CGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 4177 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 4176 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTG 4117 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| ||||| || || || ||||| || | | || || || | ||| || Sbjct 4116 TCCTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGAGTAAT 4058 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 4057 CGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 4022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979003292539398