Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq194102 104 2e-17 seq176952 93.3 3e-14 seq221835 91.5 1e-13 seq190944 91.5 1e-13 seq223622 86.0 4e-12 seq177117 84.2 1e-11 seq223142 82.4 5e-11 seq203637 82.4 5e-11 seq198453 82.4 5e-11 >seq194102 Length=976 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| |||||||| |||| || ||||| |||| || | || Sbjct 83 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 142 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || ||| Sbjct 143 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 202 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||| ||||| || || || || | ||||| || || || || Sbjct 203 TGCTTC-ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGT 261 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | || || || |||||||||||||||||| Sbjct 262 GAGGGTCTTCACGAAGATCTGCATAGTTGGT 292 >seq176952 Length=5663 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1120 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 1061 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | |||||||| || | || | || || ||||| ||| ||| Sbjct 1060 TTGCCCGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTC 1001 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | ||||| || || || || Sbjct 1000 TGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 942 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 941 CAGGGTCTTCACGAAGATCTGCATTGTTGG 912 >seq221835 Length=4727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || ||||| || Sbjct 2214 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2273 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| || ||||| || || | Sbjct 2274 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGT 2332 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | ||||| || || || || | || || | Sbjct 2333 TCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 2392 Query 33737 CAAAGATCTGCATAGTTGG----TGTGTTTATCGC 33767 | ||||||||||| ||||| ||||| || ||| Sbjct 2393 CGAAGATCTGCATTGTTGGCTGCTGTGTGTAGCGC 2427 >seq190944 Length=484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || || || |||| || | || || ||||| || Sbjct 418 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 359 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || ||||| |||| ||| Sbjct 358 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CAT 300 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || ||||| || || || || | |||||||| || || || | ||| || | Sbjct 299 TCTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGA 240 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 239 CAAAGATCTGCATA 226 >seq223622 Length=3914 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 2397 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 2456 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| || | || | || || ||||| || ||| Sbjct 2457 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 2516 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | |||||||| || || || || | ||||| || || || || Sbjct 2517 TGCTTTA-CGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCCGT 2575 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 2576 GAGGGTCTTGACAAAGATCTGCAT 2599 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| || | || || || || || Sbjct 1881 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1940 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||| || ||||| || ||||| |||| | | Sbjct 1941 GATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 1999 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||| || || || || | ||| ||||| || || || | || || | Sbjct 2000 TCTCGATGGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTGAGGGTCTTGA 2059 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 2060 CGAAGATCTGCAT 2072 >seq177117 Length=2010 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1447 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGC 1388 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||||||| | || | || || ||||| ||| || Sbjct 1387 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTT 1328 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||| || || || || | ||||| || || || || Sbjct 1327 TGCTTC-ACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1269 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT----TGGTGTGTTTATCGC 33767 | || || || ||||| ||||| || || ||||| || ||| Sbjct 1268 GAGGGTCTTGACGAAGATTTGCATTGTAGGCTGCTGTGTGTAGCGC 1223 >seq223142 Length=9055 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 6124 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 6183 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| ||| ||| Sbjct 6184 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 6243 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||||| || || || || | || || || || || || Sbjct 6244 TGCTTC-ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGT 6302 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 6303 CAGGGTCTTGACGAAGATCTGCAT 6326 >seq203637 Length=1734 Score = 82.4 bits (90), Expect = 5e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| |||| ||| ||||| |||| || | || || || || || || Sbjct 1733 TTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATG 1674 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||| || | || | ||| || ||||| || ||||| |||| | | || Sbjct 1673 AGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTC 1615 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||||| || || || || | ||| ||||| || || || | || || || || Sbjct 1614 GATGGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTGAGGGTCTTGACGAA 1555 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 1554 GATCTGCAT 1546 >seq198453 Length=848 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/210 (68%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 803 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 744 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || | || | || || ||||| || ||| Sbjct 743 TTGCCGGCGAAGATGAGGCGCTGCTGRTCRGGRGGGATGCCCTCCTTGTCCTGGATCTTC 684 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | ||||| || || || || | ||||| || || || || Sbjct 683 TGCTTSA-CGTTCTCGATSGTGTCRSWKGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 625 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 624 GAGGGTCTTCACGAAGATCTGCATTGTTGG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327804707149440