Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_025428.1 Length=59601 Score E Sequences producing significant alignments: (Bits) Value seq208634 179 1e-40 seq172781 123 9e-24 >seq208634 Length=57299 Score = 179 bits (198), Expect = 1e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 10746 CGAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGC 10805 ||| ||||||||||||||||||| |||||| || |||| ||| |||||||| | || Sbjct 47492 CGAGCTGCGCCAGTTCATCGAGCAGTTCGAGCAGCTCGAGGCCGAAAAGAAGGATGTGGC 47551 Query 10806 GGACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCAT 10865 || | |||||| | |||||||||||||||| || ||||| |||||||||||||| Sbjct 47552 CGAGCGTCAGAAGGAACTGATGGCCGAGGCCAAGGCACGCGGCTATGACACCAAGGTCAT 47611 Query 10866 GCGCAAGATCATCGCAGAGCGCAAGCGCAGCCGCGACGACATCAACGAGGAGGAAGCCGT 10925 ||||||| | ||||| |||||||||| | ||||||||| |||||||||||| | Sbjct 47612 GCGCAAGGTGATCGCGCTGCGCAAGCGCGACAAGGACGACATCGCCGAGGAGGAAGCGAT 47671 Query 10926 CCTCGAACTGTACCGCTCGGCGCTGGGGATGTCGTGATG 10964 |||||| ||||| | |||||||||||| |||||| Sbjct 47672 CCTCGAGATGTACAAGGCAGCGCTGGGGATGGTGTGATG 47710 >seq172781 Length=145 Score = 123 bits (136), Expect = 9e-24 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10761 CATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGGA 10820 |||||||| |||||| || |||| ||| ||||||||| | || || | |||||| Sbjct 145 CATCGAGCAGTTCGAGCAGCTCGAGGCCGAAAAGAAGGACGTGGCCGAGCGCCAGAAGGA 86 Query 10821 GGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCATGCGCAAGATCATCGC 10880 | | ||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| Sbjct 85 GCTGATGGCCGAGGCCAAGGCGCGCGGCTATGACACCAAGGTCATGCGCAAGGTGATCGC 26 Query 10881 AGAGCGCAAGCGC 10893 |||||||||| Sbjct 25 GCTGCGCAAGCGC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190093508788092