Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq196771 167 2e-36 >seq196771 Length=22834 Score = 167 bits (184), Expect = 2e-36 Identities = 374/551 (68%), Gaps = 23/551 (4%) Strand=Plus/Plus Query 142266 TCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGT 142325 ||||| ||| |||||||| || || | ||||| |||||||| ||||| || ||| || Sbjct 19677 TCTGGATCAGGGCTTTCCGCTGGTCACGACGAAAAAGCTGCACCTGAAATCCATCGTCCA 19736 Query 142326 CGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTTCACGATCACAACGT 142385 |||||| ||||||||||| ||||| ||||||||| ||||| || | || ||| Sbjct 19737 CGAACTGCTGTGGTTCCTGTCGGGCGACACGAACATCCGCTATCTGCAGCAGAACGGCGT 19796 Query 142386 CAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCTGTCTACGGCAAGCA 142445 || |||||||| |||||||| || || || ||| ||||||| |||||||| ||| | || Sbjct 19797 CAGCATCTGGGACGAATGGGCGGACGCGAACGGCGACCTCGGCCCTGTCTATGGCCATCA 19856 Query 142446 GTGG----ATGTCCTGGACGAACCTCGTTGTCGCTGGAGATGACGTCACAGACGAACCGA 142501 |||| || ||| ||||| || || | || ||| | || | ||| | Sbjct 19857 GTGGCGCCATTTCC-CGACGATCCGCGAGGCCGATGGCCGCGTGGTGGTGGGCGA---GG 19912 Query 142502 TCGATCAGATCCGCCGGA-TCAT-TACTGACTTGAAGAAGTCTCCTCATTCTCGTCGTCA 142559 | |||||||| ||||| | | | || | | | ||| | || |||| || || | Sbjct 19913 TGGATCAGAT-CGCCGAACTGGTGGACCG-CATCCGCAAGACGCCCGATTCACGCCGGCT 19970 Query 142560 CATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACAT 142619 |||||| | || |||||||| | || || ||| |||||| || || || || || | Sbjct 19971 GATCGTCTCGGCCTGGAACCCCGGAGAGGTGGACCGCATGGCCCTGCCGCCCTGCCATAC 20030 Query 142620 GATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTC 142679 | ||| || | | || | | | || ||||| ||||| || ||||| || Sbjct 20031 GCTGTGGCAGGTGCGGGTGCA---GGACGGCCGGCTGTCGCTGCAGCTTTACCAGCGCTC 20087 Query 142680 GGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCT 142739 ||| ||| |||||| || || ||||||||||| || || || ||||| || || || Sbjct 20088 GGCCGACATGTTCCTGGGGGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGACGCA--- 20144 Query 142740 CATTGCTCGCGAATG---CGGTCT-GGAACTCGGAGACTTCGTCCACACCTTCGGCAATT 142795 |||| || ||| ||| | || || |||||| |||||||| | ||| || Sbjct 20145 -TATGCTGGCCCATGTGACGGGATACGAGGCGGGCGACTTCATCCACACCATGGGCGATG 20203 Query 142796 CGCACATCTAC 142806 |||| |||||| Sbjct 20204 CGCATATCTAC 20214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499094786732320