Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq211828 125 7e-24 seq190944 98.7 9e-16 seq223142 95.1 1e-14 seq207513 93.3 4e-14 seq177117 89.7 5e-13 seq222267 87.8 2e-12 seq100797 86.0 6e-12 seq194102 84.2 2e-11 seq223622 82.4 7e-11 seq59638 82.4 7e-11 >seq211828 Length=4713 Score = 125 bits (138), Expect = 7e-24 Identities = 324/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTC 147518 |||| || ||||| ||||| |||||| ||| |||| || || ||||||| |||| || Sbjct 1106 GCGAGCGAGGCCAGGTTGCACACGGCCACCTCGTCGGGCGACG-TGTACTGGACGACCTC 1048 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||||||||| | | ||| || | | ||||| ||| || | ||||| Sbjct 1047 CGTGCACAGGTTCGACGACTGGATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCA 988 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AA 147635 ||||| ||| | |||||||| || ||||||||||| |||| || | ||| || Sbjct 987 GGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAA 928 Query 147636 CCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || ||| ||||| || ||| ||| || | ||||||||| | ||||| |||| Sbjct 927 CCA---CAGCTCCTGGGCCTTGACCACGCGGC-GCGCGCGGCCCTCCTGCTCGTAGCGCT 872 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 ||||| | ||| ||||| | ||| | | ||| |||||||| || | || | Sbjct 871 CGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGC 812 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | |||||||| | || ||| | ||||| ||| ||||| || || | ||||| Sbjct 811 AAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 752 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAA 147874 | |||| | |||||||| || | ||||| ||| ||| |||| | | Sbjct 751 GGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGA 692 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | | | | ||||||| ||||||||||| || | ||||| ||| | ||||| || |||| Sbjct 691 GGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCT 632 Query 147935 TTCCGCC 147941 | || || Sbjct 631 TACCACC 625 >seq190944 Length=484 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 420 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCG 361 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || |||| Sbjct 360 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 301 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| | | ||| || |||| || | ||| || || ||||| || || Sbjct 300 TTCTCGATAGTATCGCTGGACTCGACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTG 241 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 240 ACAAAGATCTGCAT 227 >seq223142 Length=9055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || |||| Sbjct 6133 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 6192 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| ||||| || || || ||| || || |||| Sbjct 6193 AAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 6252 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | || || || ||||| || || Sbjct 6253 TTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTG 6312 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 6313 ACGAAGATCTGCATG 6327 >seq207513 Length=1179 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| || |||||||| || |||| | Sbjct 998 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCA 939 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || ||||| |||| Sbjct 938 AAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 879 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || |||||||| || || Sbjct 878 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 819 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 818 ACGAAGATTTGCAT 805 >seq177117 Length=2010 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || || |||||||| || |||| Sbjct 1438 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 1379 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || || || ||| ||||| |||| Sbjct 1378 AAGATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACG 1319 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || || || || || || Sbjct 1318 TTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 1259 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1258 ACGAAGATTTGCAT 1245 >seq222267 Length=3969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||| |||| ||||| | ||||| ||||| ||| | | | | || | ||||| | Sbjct 23 GCCACGACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCACCGTGCTTC 82 Query 51792 CTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAAT 51851 | ||| |||||||||||| ||||||| | |||||||||| || |||||||||| Sbjct 83 TTACCGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAAC 142 Query 51852 TCGTGCACGTGGAATCCGTGCAGGCC 51877 ||||| |||||||| ||||| |||| Sbjct 143 TCGTGGACGTGGAAGCCGTGGGGGCC 168 >seq100797 Length=331 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | || || || |||||||| || |||| Sbjct 327 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCG 268 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| ||||| |||||||| || || || || || |||| Sbjct 267 AAGATGAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACG 208 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | ||| || || || || || || Sbjct 207 TTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTG 148 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 147 ACGAAGATCTGCATG 133 >seq194102 Length=976 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| || ||| || || |||||||| || |||| Sbjct 92 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 151 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| || || || || || || || || || || |||| Sbjct 152 AAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 211 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 212 TTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTC 271 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 272 ACGAAGATCTGCAT 285 >seq223622 Length=3914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | || || || |||||||| ||||| | Sbjct 1879 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCG 1938 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || || || || || || || || |||| Sbjct 1939 AAGATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 1998 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| ||| | ||| || || || || || || Sbjct 1999 TTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTGCCGGTGAGGGTCTTG 2058 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 2059 ACGAAGATCTGCATG 2073 >seq59638 Length=127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 51793 TGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATT 51852 ||||| |||||||||||| ||||||| | |||||||||| || |||||||||| | Sbjct 92 TGCCGAAGGGGTTGAAGTGGCCGCCCGCACTCACGCAGCCGTTGGTGTTGTCGCCGAACT 33 Query 51853 CGTGCACGTGGAATCCGTGCAGGCC 51877 |||| |||||||| ||||| |||| Sbjct 32 CGTGGACGTGGAAGCCGTGGGGGCC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475273817057520